RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 GATMP50440 423 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 NUDT6P53370 316 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DEFA1P59665 94 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DEFA3P59666 94 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SNRPGP62308 76 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 LSM3P62310 102 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 SELENOWP63302 87 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PSPHP78330 225 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 E2F1Q01094 437 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SPIBQ01892 262 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RHAGQ02094 409 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 BCL2L1Q07817 233 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ACSM2AQ08AH3 577 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF763Q0D2J5 394 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SLC13A2Q13183 592 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CHIT1Q13231 466 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PLD1Q13393 1074 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ASAH1Q13510 395 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 GPR50Q13585 617 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CDH18Q13634 790 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 IL10RAQ13651 578 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ARHGEF7Q14155 803 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 STARD3Q14849 445 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RGNQ15493 299 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF79Q15937 498 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SSX1Q16384 188 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CLPPQ16740 277 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 SYT16Q17RD7 645 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MICAQ29983 383 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 LRRC26Q2I0M4 334 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF630Q2M218 657 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 PRTGQ2VWP7 1150 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PGS1Q32NB8 556 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF658BQ4V348 819 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 ATP13A5Q4VNC0 1218 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 IFI44LQ53G44 452 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SPIN4Q56A73 249 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 SGO1Q5FBB7 561 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 ATAD3CQ5T2N8 411 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MPP7Q5T2T1 576 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 GCNT6Q5T4J0 391 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ANXA8L1Q5VT79 327 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MEDAGQ5VYS4 303 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZDHHC20Q5W0Z9 365 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ACSM2BQ68CK6 577 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TPGS2Q68CL5 300 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 LRRC66Q68CR7 880 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 C12orf73Q69YU5 71 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF770Q6IQ21 691 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 RETSATQ6NUM9 610 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ZNF544Q6NX49 715 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ERAP2Q6P179 960 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 C22orf39Q6P5X5 142 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 KLHL17Q6TDP4 642 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CRTC1Q6UUV9 634 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CCBE1Q6UXH8 406 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 LINGO4Q6UY18 593 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 GDPGP1Q6ZNW5 385 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 FAM92BQ6ZTR7 304 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TPRG1Q6ZUI0 275 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 USP45Q70EL2 814 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PAGE2Q7Z2X7 111 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 GALNT10Q86SR1 603 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TMEM150AQ86TG1 271 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TSPAN33Q86UF1 283 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TMEM173Q86WV6 379 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 RNF130Q86XS8 419 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 UBQLNLQ8IYU4 475 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CLECL1Q8IZS7 167 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 METTL4Q8N3J2 472 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CPXM2Q8N436 756 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 CLDN19Q8N6F1 224 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 POC5Q8NA72 575 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ATG16L2Q8NAA4 619 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PCSK9Q8NBP7 692 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 FAM83FQ8NEG4 500 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 FAM46DQ8NEK8 389 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR2AP1Q8NGE2 309 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR10Q1Q8NGQ4 319 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR6F1Q8NGZ6 308 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR56A3Q8NH54 315 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 LILRB4Q8NHJ6 448 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 HTRA1Q92743 480 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 GGHQ92820 318 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 NEUROG1Q92886 237 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 FGF11Q92914 225 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 KIAA1143Q96AT1 154 aaPredicted RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 SH3KBP1Q96B97 665 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MTERF3Q96E29 417 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 WDR34Q96EX3 536 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 ST6GAL2Q96JF0 529 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 RNF170Q96K19 258 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MSLNLQ96KJ4 702 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 MOGAT1Q96PD6 335 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 OPALINQ96PE5 141 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 TRNT1Q96Q11 434 aaKnown RBP2.31□□□□□ -2.04
SPG11-223ENST00000560858 OR2A14Q96R47 310 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 PANX1Q96RD7 426 aa2.31□□□□□ -2.04
SPG11-223ENST00000560858 DMRTA2Q96SC8 542 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms