RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZFP90Q8TF47 636 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 RASSF5Q8WWW0 418 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CNOT9Q92600 299 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TESCQ96BS2 214 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MTERF3Q96E29 417 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 NRBF2Q96F24 287 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MAELQ96JY0 434 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 NUDT9Q9BW91 350 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DPH1Q9BZG8 443 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PAIP1Q9H074 479 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DSN1Q9H410 356 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MCCC2Q9HCC0 563 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SRA1Q9HD15 236 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SERINC1Q9NRX5 453 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PCOLCE2Q9UKZ9 415 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC7A7Q9UM01 511 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ABCG2Q9UNQ0 655 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MED31Q9Y3C7 131 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 RALGAPA1Q6GYQ0 2036 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PTPRDP23468 1912 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 KCNE1BA0A087WTH5 132 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC22A2O15244 555 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 FOXS1O43638 330 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TLX2O43763 284 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ITGA10O75578 1167 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR6B1O95007 311 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 AGR2O95994 175 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 STSP08842 583 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 HOXD12P35452 270 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 EPHA4P54764 986 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 HSD17B7P56937 341 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SNRPNP63162 240 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ST3GAL3Q11203 375 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 FAM53BQ14153 422 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TLR1Q15399 786 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MED22Q15528 200 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC36A3Q495N2 470 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PTRH1Q86Y79 214 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC34A3Q8N130 599 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 NATD1Q8N6N6 113 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR8J2Q8NGG1 315 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CT55Q8WUE5 264 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC35A4Q96G79 324 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 C10orf90Q96M02 699 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF578Q96N58 590 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 FEVQ99581 238 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 APOL4Q9BPW4 351 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 KCNS3Q9BQ31 491 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 UTP23Q9BRU9 249 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PELOQ9BRX2 385 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SCNM1Q9BWG6 230 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CDADC1Q9BWV3 514 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 C1QTNF3Q9BXJ4 246 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 KAT8Q9H7Z6 458 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ERVMER34-1Q9H9K5 563 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PARD6AQ9NPB6 346 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DNAJC27Q9NZQ0 273 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 LRFN1Q9P244 771 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 FBXL4Q9UKA2 621 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 BLOC1S6Q9UL45 172 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 LIPT1Q9Y234 373 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TMEM184BQ9Y519 407 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ASB4Q9Y574 426 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PCDHGB7Q9Y5F8 929 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TSC2P49815 1807 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DOCK7Q96N67 2140 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 BCKDKO14874 412 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SNAP29O95721 258 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 POLR2IP36954 125 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CDH15P55291 814 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 RAB15P59190 212 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 NCF4Q15080 339 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ELAVL1Q15717 326 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CSRP2Q16527 193 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 TMEM176BQ3YBM2 270 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 EEF1A1P5Q5VTE0 462 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 C19orf48Q6RUI8 117 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SHFQ7M4L6 423 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 GALNTL5Q7Z4T8 443 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 BMP8AQ7Z5Y6 402 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MAML2Q8IZL2 1156 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CNEP1R1Q8N9A8 125 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 ZBTB44Q8NCP5 570 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 C7orf57Q8NEG2 295 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR4K5Q8NGD3 323 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR1N1Q8NGS0 311 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 OR4C3Q8NH37 302 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 BRIX1Q8TDN6 353 aaKnown RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 LCORQ96JN0 433 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CCDC115Q96NT0 180 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 SLC38A2Q96QD8 506 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 WDR77Q9BQA1 342 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 CPPED1Q9BRF8 314 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DCUN1D5Q9BTE7 237 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 YIPF3Q9GZM5 350 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 PITHD1Q9GZP4 211 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 MTHFD2LQ9H903 347 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-209ENST00000560637 FOXJ2Q9P0K8 574 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 DNAJB9Q9UBS3 223 aa5.05□□□□□ -1.6
VPS13C-209ENST00000560637 COMMD3-BMI1R4GMX3 469 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms