RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 FBXO34Q9NWN3 711 aa15.9■□□□□ 0.14
TSPAN3-208ENST00000560514 CISD1Q9NZ45 108 aaKnown RBP15.9■□□□□ 0.14
TSPAN3-208ENST00000560514 ALPK2Q86TB3 2170 aa15.9■□□□□ 0.14
TSPAN3-208ENST00000560514 OR7A17O14581 309 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 NDUFB5O43674 189 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 FADS1O60427 444 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 COQ9O75208 318 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 SRD5A1P18405 259 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 ADH6P28332 368 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 VLDLRP98155 873 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 TAB1Q15750 504 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 DECR1Q16698 335 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 CYP27C1Q4G0S4 372 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 CYB5R2Q6BCY4 276 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 DNAJC14Q6Y2X3 702 aaPredicted RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 CCDC25Q86WR0 208 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 RELL1Q8IUW5 271 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 CEP112Q8N8E3 955 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 SELENOMQ8WWX9 145 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 KISS1RQ969F8 398 aaPredicted RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 EXOSC8Q96B26 276 aaKnown RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 REXO5Q96IC2 774 aaKnown RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 USB1Q9BQ65 265 aaKnown RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 TBL1XR1Q9BZK7 514 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 TSPYL1Q9H0U9 437 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 FAM120CQ9NX05 1096 aaKnown RBP15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 VDAC3Q9Y277 283 aa15.89■□□□□ 0.13
TSPAN3-208ENST00000560514 YLPM1P49750 1951 aaKnown RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 SHISA8B8ZZ34 492 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 CXCL13O43927 109 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 C2P06681 752 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 THBS1P07996 1170 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 AGTR1P30556 359 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 RFX3P48380 749 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 PSMD4P55036 377 aaKnown RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 IRF9Q00978 393 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 CKAP4Q07065 602 aaKnown RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 BSPH1Q075Z2 132 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 LOXL1Q08397 574 aaPredicted RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 C17orf67Q0P5P2 114 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 GALNT1Q10472 559 aaPredicted RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 TRADDQ15628 312 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 TSC22D1Q15714 1073 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 TMEM201Q5SNT2 666 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 SFRP5Q5T4F7 317 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 AGAP6Q5VW22 663 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 MARCH3Q86UD3 253 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 FAM9CQ8IZT9 166 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 CENPLQ8N0S6 344 aaPredicted RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 PTGR2Q8N8N7 351 aaPredicted RBP15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 GRIP2Q9C0E4 1043 aa15.88■□□□□ 0.13
TSPAN3-208ENST00000560514 CADP27708 2225 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 PLOD3O60568 738 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 KLHL2O95198 593 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 PABPC4LP0CB38 370 aaKnown RBP15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 SLC25A16P16260 332 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 ZNF17P17021 662 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 ME2P23368 584 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 MPIP34949 423 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 PHBP35232 272 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 RUNX1T1Q06455 604 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 LIPNQ5VXI9 398 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 ESPNLQ6ZVH7 1005 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 GALNT10Q86SR1 603 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 C1orf52Q8N6N3 182 aaKnown RBP15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 OR10H5Q8NGA6 315 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 PHF21BQ96EK2 531 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 TRIM2Q9C040 744 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 BRF2Q9HAW0 419 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 Q9N2J8 555 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 ZDHHC18Q9NUE0 388 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 FLRT3Q9NZU0 649 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 NFU1Q9UMS0 254 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 SNX6Q9UNH7 406 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 B3GALT5Q9Y2C3 310 aa15.87■□□□□ 0.13
TSPAN3-208ENST00000560514 ANK2Q01484 3957 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 HMX2A2RU54 273 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 TNFSF11O14788 317 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 LMX1BO60663 402 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 PDYNP01213 254 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 CD8AP01732 235 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 OPN1LWP04000 364 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 CDH11P55287 796 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 PSG6Q00889 435 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 SRSF2Q01130 221 aaKnown RBP15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 ZNHIT3Q15649 155 aaPredicted RBP15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 MROH9Q5TGP6 573 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 HBMQ6B0K9 141 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 MFSD12Q6NUT3 480 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 DTX2Q86UW9 622 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 BANPQ8N9N5 519 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 OR7G2Q8NG99 324 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 OR4F6Q8NGB9 312 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 OR2V1Q8NHB1 315 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 PIWIL2Q8TC59 973 aaKnown RBP15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 BBS4Q96RK4 519 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 FUT8Q9BYC5 575 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 POTEKPQ9BYX7 375 aa15.86■□□□□ 0.13
TSPAN3-208ENST00000560514 RTN4RQ9BZR6 473 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms