RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ATP6V1C1P21283 382 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 LCN1P31025 176 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 CHRNEQ04844 493 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 FLYWCH1Q4VC44 716 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 C8orf82Q6P1X6 216 aaPredicted RBP19.91■□□□□ 0.78
SNX1-210ENST00000560260 HMGN2P46Q86SG4 172 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 MARCH3Q86UD3 253 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 GPATCH1Q9BRR8 931 aaKnown RBP19.91■□□□□ 0.78
SNX1-210ENST00000560260 TTTY12Q9BZ98 90 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 P2RX2Q9UBL9 471 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 WIF1Q9Y5W5 379 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 NINQ8N4C6 2090 aa19.91■□□□□ 0.78
SNX1-210ENST00000560260 NCKAP5O14513 1909 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TTLL8A6PVC2 850 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 CBX6O95503 412 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 BCHEP06276 602 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 ARAFP10398 606 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TBXA2RP21731 343 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 NUDT2P50583 147 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 GZMMP51124 257 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 SNTA1Q13424 505 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 GPR68Q15743 365 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 ADRM1Q16186 407 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 GPAT3Q53EU6 434 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 RPS26P11Q5JNZ5 115 aaPredicted RBP19.9■□□□□ 0.78
SNX1-210ENST00000560260 GCNT6Q5T4J0 391 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 ZNF324BQ6AW86 544 aaPredicted RBP19.9■□□□□ 0.78
SNX1-210ENST00000560260 SLC30A6Q6NXT4 461 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 PTOV1Q86YD1 416 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 FAM98AQ8NCA5 519 aaKnown RBP19.9■□□□□ 0.78
SNX1-210ENST00000560260 FBXO27Q8NI29 283 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 SLC38A5Q8WUX1 472 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TMEM19Q96HH6 336 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TMEM41AQ96HV5 264 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 ZNF597Q96LX8 424 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TRNT1Q96Q11 434 aaKnown RBP19.9■□□□□ 0.78
SNX1-210ENST00000560260 SAP130Q9H0E3 1048 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 KAT8Q9H7Z6 458 aaKnown RBP19.9■□□□□ 0.78
SNX1-210ENST00000560260 A4GALTQ9NPC4 353 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 ASF1BQ9NVP2 202 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 TAGLN3Q9UI15 199 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 LIPT1Q9Y234 373 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 WDR45Q9Y484 360 aa19.9■□□□□ 0.78
SNX1-210ENST00000560260 FAM166BA8MTA8 275 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 EVPLLA8MZ36 301 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 B8ZZF3 427 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 GNB5O14775 395 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 SNPHO15079 494 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 SLC28A2O43868 658 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 STX11O75558 287 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 NPPAP01160 153 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 GUSBP08236 651 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 RFPL3SP0C7P2 107 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 NR2F1P10589 423 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 SLC6A2P23975 617 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 MST1P26927 711 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 KRT72Q14CN4 511 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 CD226Q15762 336 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 MAPK14Q16539 360 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 AP1ARQ63HQ0 302 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 HACD2Q6Y1H2 254 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 LRRC74BQ6ZQY2 392 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 NET1Q7Z628 596 aaPredicted RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 MTERF4Q7Z6M4 381 aaKnown RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 SIAH3Q8IW03 269 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 WDSUB1Q8N9V3 476 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 GATSQ8NAP1 163 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 OR8J3Q8NGG0 315 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 ZG16BQ96DA0 208 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 BARD1Q99728 777 aaKnown RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 THUMPD3Q9BV44 507 aaKnown RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 QRSL1Q9H0R6 528 aaKnown RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 TSPAN10Q9H1Z9 355 aaPredicted RBP19.89■□□□□ 0.77
SNX1-210ENST00000560260 EFCAB1Q9HAE3 211 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 UBQLN4Q9NRR5 601 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 GID8Q9NWU2 228 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 USP22Q9UPT9 525 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 CORO2BQ9UQ03 480 aa19.89■□□□□ 0.77
SNX1-210ENST00000560260 ALG1L2C9J202 215 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 UGT2B17O75795 530 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 SNX4O95219 450 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 ATP12AP54707 1039 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 FAM180AQ6UWF9 173 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 ZNF619Q8N2I2 560 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 JSRP1Q96MG2 331 aaPredicted RBP19.88■□□□□ 0.77
SNX1-210ENST00000560260 ZNF703Q9H7S9 590 aaPredicted RBP19.88■□□□□ 0.77
SNX1-210ENST00000560260 ZFP64Q9NPA5 681 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 POLE3Q9NRF9 147 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 CMTM6Q9NX76 183 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 GMPR2Q9P2T1 348 aaKnown RBP19.88■□□□□ 0.77
SNX1-210ENST00000560260 DSPPQ9NZW4 1301 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 SHANK1Q9Y566 2161 aa19.88■□□□□ 0.77
SNX1-210ENST00000560260 PRRC2CQ9Y520 2896 aaKnown RBP19.88■□□□□ 0.77
SNX1-210ENST00000560260 OIP5O43482 229 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 ANGPTL1O95841 491 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 ZNF24P17028 368 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 MASP1P48740 699 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 TDGF1P3P51864 188 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 HPCAP84074 193 aa19.87■□□□□ 0.77
SNX1-210ENST00000560260 PLGLB1Q02325 96 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms