RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FBXW8Q8N3Y1 598 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 POGLUT1Q8NBL1 392 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 SLC7A6OSQ96CW6 309 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TMCO6Q96DC7 493 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 C5orf34Q96MH7 638 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 UBL7Q96S82 380 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 SECISBP2Q96T21 854 aaKnown RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TREX2Q9BQ50 279 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 ECSITQ9BQ95 431 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 ANGPTL4Q9BY76 406 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TMEM38AQ9H6F2 299 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 SACM1LQ9NTJ5 587 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 RYDENQ9NUL5 291 aaKnown RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 THUMPD1Q9NXG2 353 aaKnown RBP11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TAS2R1Q9NYW7 299 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 CNIH4Q9P003 139 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 TMEM181Q9P2C4 612 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 ABCD2Q9UBJ2 740 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 WDR45Q9Y484 360 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 EML6Q6ZMW3 1958 aa11.74□□□□□ -0.53
SHMT2-227ENST00000557269 PIEZO2Q9H5I5 2752 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 C15orf38-AP3S2A0A0A6YYH1 394 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 ANKRD33BA6NCL7 494 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PRORSD1PA6NEY8 169 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PRAMEF25A6NGN4 478 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 SCO2O43819 266 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PEX1O43933 1283 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 HS6ST1O60243 411 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 KIAA0513O60268 411 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 BCAS1O75363 584 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-227ENST00000557269 UGT2B17O75795 530 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PGM3O95394 542 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 OXSR1O95747 527 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-227ENST00000557269 P04436 131 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 GUSBP08236 651 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 SFTPCP11686 197 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 DCTP40126 519 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 RFC3P40938 356 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 GSK3BP49841 420 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 MNAT1P51948 309 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PMP22Q01453 160 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 SCARB2Q14108 478 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 CD226Q15762 336 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 KLHL26Q53HC5 615 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 FNDC7Q5VTL7 733 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 ARPINQ7Z6K5 226 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-227ENST00000557269 IFNEQ86WN2 208 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF619Q8N2I2 560 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 RNF148Q8N7C7 305 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 GATSQ8NAP1 163 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 OR2M7Q8NG81 312 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 CDRT15Q96T59 188 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 METTL7AQ9H8H3 244 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 SPAG4Q9NPE6 437 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 POLE3Q9NRF9 147 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 UBQLN4Q9NRR5 601 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 TUBA8Q9NY65 449 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-227ENST00000557269 ADA2Q9NZK5 511 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 DSPPQ9NZW4 1301 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 L3MBTL1Q9Y468 752 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 PCDHGA10Q9Y5H3 936 aa11.73□□□□□ -0.53
SHMT2-227ENST00000557269 AGAP5A6NIR3 686 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 LRRC3CA6NJW4 275 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 CLDN24A6NM45 220 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 FAM220BPB1ANY3 271 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 OIP5O43482 229 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 TRIM3O75382 744 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 WISP2O76076 250 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 NGFRP08138 427 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 AQP1P29972 269 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 LCN1P31025 176 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 PCGF2P35227 344 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 MEOX1P50221 254 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 CRISP3P54108 245 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 ATP12AP54707 1039 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 EEFSECP57772 596 aaKnown RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 PLAURQ03405 335 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 FOXO1Q12778 655 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF141Q15928 474 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 ZNF630Q2M218 657 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 VMACQ2NL98 169 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 NDUFAF6Q330K2 333 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 RNFT1Q5M7Z0 435 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 PDZK1Q5T2W1 519 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 OR5M10Q6IEU7 315 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 REEP3Q6NUK4 255 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 TMEM81Q6P7N7 255 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 C16orf89Q6UX73 402 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 TEX19Q8NA77 164 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 C11orf65Q8NCR3 313 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 FAM156AQ8NDB6 213 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 PNPLA2Q96AD5 504 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 REXO5Q96IC2 774 aaKnown RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 TAAR6Q96RI8 345 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 KLHDC3Q9BQ90 382 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 OSBPL11Q9BXB4 747 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 MTHFD2LQ9H903 347 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-227ENST00000557269 BCL2L10Q9HD36 194 aa11.72□□□□□ -0.53
SHMT2-227ENST00000557269 KLRF1Q9NZS2 232 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms