RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 DGAT2Q96PD7 388 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 VRK1Q99986 396 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 ARPC5LQ9BPX5 153 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 SLIRPQ9GZT3 109 aaKnown RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 CHMP1AQ9HD42 196 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 DIMT1Q9UNQ2 313 aaKnown RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 NTNG1Q9Y2I2 539 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 SCN4AP35499 1836 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 SLC2A10O95528 541 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF888P0CJ79 500 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 TFPIP10646 304 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 CTSEP14091 401 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 RBM34P42696 430 aaKnown RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 VEGFCP49767 419 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 RGS19P49795 217 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 OR10A3P58181 314 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 TAGLNQ01995 201 aaKnown RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 AMZ1Q400G9 498 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 MINDY4Q4G0A6 757 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 GGTA1PQ4G0N0 100 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 NDUFAF5Q5TEU4 345 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 METTL11BQ5VVY1 283 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 TMUB2Q71RG4 321 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 TMEM185AQ8NFB2 350 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 OR10H5Q8NGA6 315 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 SMAP2Q8WU79 429 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-223ENST00000557005 DCUN1D4Q92564 292 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 GLYATL1Q969I3 302 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 PRRC1Q96M27 445 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 OR7D2Q96RA2 312 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 ZIC5Q96T25 663 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF559Q9BR84 538 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 SEC22CQ9BRL7 303 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 POFUT1Q9H488 388 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 GABRQQ9UN88 632 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 DHDHQ9UQ10 334 aa4.7□□□□□ -1.66
SYNE2-223ENST00000557005 A0A0G2JMP0 313 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 A0A1B0GVI7 797 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 GXYLT2A0PJZ3 443 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 WASH3PC4AMC7 463 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 F8W036 122 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 POLR1CO15160 346 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CDC40O60508 579 aaKnown RBP eCLIP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 SIX6O95475 246 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ITGBL1O95965 494 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PDGFAP04085 211 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 EPCAMP16422 314 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PVALBP20472 110 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PSMA3P25788 255 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 BMPR1AP36894 532 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CLDN20P56880 219 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 BLOC1S1P78537 153 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 OPCMLQ14982 345 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PON3Q15166 354 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 RAB11BQ15907 218 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 NKPD1Q17RQ9 610 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ITPRIPL2Q3MIP1 535 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ACSM3Q53FZ2 586 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PRRT3Q5FWE3 981 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF362Q5T0B9 420 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 SLC22A10Q63ZE4 541 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 GSG1LQ6UXU4 331 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 NLRC3Q7RTR2 1065 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 TMPRSS9Q7Z410 1059 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ATCAYQ86WG3 371 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CPA6Q8N4T0 437 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CYB561A3Q8NBI2 242 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 OR4M2Q8NGB6 313 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 OR5M3Q8NGP4 307 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF689Q96CS4 500 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 LRRC46Q96FV0 321 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 HS6ST2Q96MM7 605 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 KLF16Q9BXK1 252 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 FANCFQ9NPI8 374 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PHPT1Q9NRX4 125 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ACTR10Q9NZ32 417 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 USP36Q9P275 1121 aaKnown RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 SCP2D1Q9UJQ7 156 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 RCE1Q9Y256 329 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 KLK4Q9Y5K2 254 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 HEBP2Q9Y5Z4 205 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 A0A1W2PPL8 197 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 A0A1W2PQ45 241 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 A0A1W2PQY0 241 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CDHR4A6H8M9 788 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 SLC9B1P1A6NJY1 282 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 PRAMEF2O60811 474 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 C8AP07357 584 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 LAG3P18627 525 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 MAPK3P27361 379 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 XCR1P46094 333 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ACTC1P68032 377 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ACTA1P68133 377 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 POU6F2P78424 691 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-223ENST00000557005 DSC1Q08554 894 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CRHR2Q13324 411 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 GAS6Q14393 721 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 CCSMST1Q4G0I0 132 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 ABCA11PQ4W5N1 156 aa4.69□□□□□ -1.66
SYNE2-223ENST00000557005 LRIF1Q5T3J3 769 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms