RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AHRP35869 848 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 IFNGR2P38484 337 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 PER3P56645 1201 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CLDN2P57739 230 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 DEFB103AP81534 67 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 REEP5Q00765 189 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SREBF2Q12772 1141 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TEAD2Q15562 447 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM44Q2T9K0 475 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SLC36A2Q495M3 483 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CCNJQ5T5M9 372 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SDE2Q6IQ49 451 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SMARCD3Q6STE5 483 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF782Q6ZMW2 699 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 NUDT13Q86X67 352 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CPOQ8IVL8 374 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 NRMQ8IXM6 262 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 GHDCQ8N2G8 530 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 KLHL36Q8N4N3 616 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF655Q8N720 491 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM99Q8N816 258 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LINC01555Q8NAE3 123 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 OR51G2Q8NGK0 314 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 OR5M3Q8NGP4 307 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 OR2L2Q8NH16 312 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 BBS10Q8TAM1 723 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SMAP2Q8WU79 429 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TFGQ92734 400 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 RFKQ969G6 155 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 RAD51AP1Q96B01 352 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ARRDC3Q96B67 414 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CNRIP1Q96F85 164 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SCMH1Q96GD3 660 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LINC00615Q96LM1 132 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 AIF1LQ9BQI0 150 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 THAP7Q9BT49 309 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ABCG5Q9H222 651 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 DPEP2Q9H4A9 486 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CDCP1Q9H5V8 836 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 C6orf106Q9H6K1 298 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 FOLH1BQ9HBA9 442 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 EQTNQ9NQ60 294 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 WASH6PQ9NQA3 447 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SLC35C2Q9NQQ7 365 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ENAMQ9NRM1 1142 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CYSLTR2Q9NS75 346 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 NUDT15Q9NV35 164 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 IL20Q9NYY1 176 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 EIF3KQ9UBQ5 218 aaKnown RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SRRDQ9UH36 339 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 MOSPD1Q9UJG1 213 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 MAFFQ9ULX9 164 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 MGAT4AQ9UM21 535 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SATB2Q9UPW6 733 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 RASD1Q9Y272 281 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 NCKAP1Q9Y2A7 1128 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 VCANP13611 3396 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TRPM6Q9BX84 2022 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LOC105369274A0A096LPK9 316 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 A0A0B4J203 849 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CENPVL1A0A0U1RR11 272 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 C17orf113A0A1B0GUU1 675 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 A0A1W2PR48 441 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 C7orf66A4D0T2 115 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 PRR23AA6NEV1 266 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 MAN2B1O00754 1011 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 CASC3O15234 703 aaKnown RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 EFCAB14O75071 495 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 RFPL3O75679 317 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SLC22A5O76082 557 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ALDH1A1P00352 501 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LRG1P02750 347 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 INHAP05111 366 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ERGP11308 486 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 KELP23276 732 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 HTR1FP30939 366 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 AP2S1P53680 142 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ATP12AP54707 1039 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 FXYD6P3P58550 94 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TAS2R38P59533 333 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SNRPNP63162 240 aaKnown RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 E2F1Q01094 437 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TRAM2Q15035 370 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 PGGHGQ32M88 737 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SLC25A35Q3KQZ1 300 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 RNASE12Q5GAN4 147 aaKnown RBP5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF311Q5JNZ3 666 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 C18orf63Q68DL7 685 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 OR4C11Q6IEV9 310 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LILRA6Q6PI73 481 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 TEX261Q6UWH6 196 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF620Q6ZNG0 422 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SYT9Q86SS6 491 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 LRRTM4Q86VH4 590 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 C12orf40Q86WS4 652 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SFTPA1Q8IWL2 248 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 OR4N4Q8N0Y3 316 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 SAMD12Q8N8I0 201 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF680Q8NEM1 530 aa5.06□□□□□ -1.6
LIMA1-212ENST00000552491 BEST4Q8NFU0 473 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms