RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 F7P08709 466 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 AHCYP23526 432 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 GKP32189 559 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 BTCP35070 178 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 GJA4P35212 333 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 RFC3P40938 356 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CAPZA2P47755 286 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CSNK1DP48730 415 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 NR0B1P51843 470 aaKnown RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 CRISP1P54107 249 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CDH4P55283 916 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 ACTR1AP61163 376 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 RPS14P62263 151 aaKnown RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 SELENOWP63302 87 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PITX1P78337 314 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 KRT33BQ14525 404 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 NDUFA9Q16795 377 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FLYWCH1Q4VC44 716 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM76BQ5HYJ3 339 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 SPANXN4Q5MJ08 99 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 DNLZQ5SXM8 178 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM69AQ5T7M9 428 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM72AQ5TYM5 149 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM72DQ6L9T8 149 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FAM72BQ86X60 149 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PTOV1Q86YD1 416 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 GPSM1Q86YR5 675 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 LRRC56Q8IYG6 542 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 OR8J2Q8NGG1 315 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CLHC1Q8NHS4 586 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 METTL6Q8TCB7 284 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 SCRN2Q96FV2 425 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 FEVQ99581 238 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MNTQ99583 582 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 PRRX2Q99811 253 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TREX2Q9BQ50 279 aaPredicted RBP4.94□□□□□ -1.62
USP28-213ENST00000544967 LRTM1Q9HBL6 345 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 BRD7Q9NPI1 651 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 B3GAT2Q9NPZ5 323 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 HCN3Q9P1Z3 774 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 CFAP97Q9P2B7 532 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 BTNL2Q9UIR0 455 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 TECTAO75443 2155 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 MUC3AQ02505 3323 aa4.94□□□□□ -1.62
USP28-213ENST00000544967 A8MUA0 341 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 WASH3PC4AMC7 463 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 MCIDASD6RGH6 385 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PROB1E7EW31 1015 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 G3V3Q6 166 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 M0R296 226 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PSMD9O00233 223 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR7A17O14581 309 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZNF749O43361 778 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NARSO43776 548 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 OR2A4O95047 310 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HSMCR30P0CW71 290 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ADH5P11766 374 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 DRD2P14416 443 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PPP3CBP16298 524 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 BPIP17213 487 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TNFSF4P23510 183 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CORO1AP31146 461 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 VIPR2P41587 438 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 AGFG1P52594 562 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 WNT4P56705 351 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 DCDP81605 110 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 DSC2Q02487 901 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 UBXN2BQ14CS0 331 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PTPRNQ16849 979 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GSG1Q2KHT4 349 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 MPEG1Q2M385 716 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZNF284Q2VY69 593 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RFTN2Q52LD8 501 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 IFI44LQ53G44 452 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ARSIQ5FYB1 569 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 YOD1Q5VVQ6 348 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 ABI3BPQ7Z7G0 1075 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ADIPOR2Q86V24 386 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 LRRTM4Q86VH4 590 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 LAPTM4BQ86VI4 370 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ARMC10Q8N2F6 343 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 STK40Q8N2I9 435 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HUS1BQ8NHY5 278 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CSGALNACT1Q8TDX6 532 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 MYEOVQ96EZ4 313 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZNF764Q96H86 408 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 KCNC2Q96PR1 638 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR2A7Q96R45 310 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 KXD1Q9BQD3 176 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 DPH7Q9BTV6 452 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 POLDIP3Q9BY77 421 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 GPR63Q9BZJ6 419 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 POLR2J2Q9GZM3 115 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 OR51M1Q9H341 326 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 DDX31Q9H8H2 851 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 RDH14Q9HBH5 336 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 EXOSC4Q9NPD3 245 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 NLE1Q9NVX2 485 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 TAS2R3Q9NYW6 316 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms