RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 EXO1Q9UQ84 846 aaKnown RBP13.42□□□□□ -0.26
LIMS1-215ENST00000544547 MCM3APO60318 1980 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 TRBV2A0A0J9YWF9 115 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 GMFGO60234 142 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 GPR37L1O60883 481 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ITGA10O75578 1167 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 AKT2P31751 481 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 SLC1A3P43003 542 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ACSM3Q53FZ2 586 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 RTP2Q5QGT7 225 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 TMEM88Q6PEY1 159 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 RANBP3LQ86VV4 465 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-215ENST00000544547 FAM129CQ86XR2 697 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 CCDC107Q8WV48 283 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF582Q96NG8 517 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-215ENST00000544547 SLC12A9Q9BXP2 914 aa13.42□□□□□ -0.26
LIMS1-215ENST00000544547 LRRC72A6NJI9 287 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ELOA3DA6NLF2 546 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 AGPAT2O15120 278 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 PRICKLE3O43900 615 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 PEX14O75381 377 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ACP2P11117 423 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 IGFALSP35858 605 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 E2F1Q01094 437 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 FABP5Q01469 135 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 C19orf57Q0VDD7 668 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ELOA3BQ3SY89 546 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 XKR4Q5GH76 650 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 KRBOX4Q5JUW0 171 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 PRAMEF14Q5SWL7 426 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 TPGS2Q68CL5 300 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ESPNLQ6ZVH7 1005 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ELOA3Q8NG57 546 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 OR10K1Q8NGX5 313 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 OR5W2Q8NH69 310 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 FOXJ1Q92949 421 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 KIAA1143Q96AT1 154 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ECHDC3Q96DC8 303 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 LRRC46Q96FV0 321 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 B3GNT4Q9C0J1 378 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 BIN3Q9NQY0 253 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 DNMT3BQ9UBC3 853 aaKnown RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 MRTO4Q9UKD2 239 aaKnown RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SLC6A14Q9UN76 642 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 GABRB1P18505 474 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 PNLIPRP1P54315 467 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 NLRC3Q7RTR2 1065 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 NUDT13Q86X67 352 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 CMTM8Q8IZV2 173 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 MS4A15Q8N5U1 240 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 OR2AP1Q8NGE2 309 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SORCS1Q8WY21 1168 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 TCEAL3Q969E4 200 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 HSPA12BQ96MM6 686 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 KXD1Q9BQD3 176 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SLC25A18Q9H1K4 315 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 NDUFB11Q9NX14 153 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 UBR3Q6ZT12 1888 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 GYPBP06028 91 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ACSM4P0C7M7 580 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF3P17036 446 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 CCND3P30281 292 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SOX18P35713 384 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ACTR1BP42025 376 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 EVX1P49640 407 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SEC13P55735 322 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ACTR1AP61163 376 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 AIMP2Q13155 320 aaKnown RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ILKQ13418 452 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SEC23BQ15437 767 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 Q6ZVU0 165 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SMPDL3AQ92484 453 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ISG20Q96AZ6 181 aaKnown RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF514Q96K75 400 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 MS4A7Q9GZW8 240 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SH2B3Q9UQQ2 575 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 TTC3P53804 2025 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SLC9B1P1A6NJY1 282 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 LIPCP11150 499 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 AOAHP28039 575 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 CLDN12P56749 244 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 TP53I3Q53FA7 332 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 IGSF11Q5DX21 431 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 ALKBH2Q6NS38 261 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 GSG1LQ6UXU4 331 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 BTN2A1Q7KYR7 527 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 TMPRSS12Q86WS5 348 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 CCDC71Q8IV32 467 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 KCT2Q8NC54 265 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 PTTG3PQ9NZH4 202 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 FLVCR2Q9UPI3 526 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 NAALAD2Q9Y3Q0 740 aa13.41□□□□□ -0.26
LIMS1-215ENST00000544547 RBM7Q9Y580 266 aaKnown RBP13.41□□□□□ -0.26
LIMS1-215ENST00000544547 SORDQ00796 357 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 SYPL1Q16563 259 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 STX12Q86Y82 276 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 RELL2Q8NC24 303 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-215ENST00000544547 BARHL1Q9BZE3 327 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 SLC6A16Q9GZN6 736 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF350Q9GZX5 532 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms