RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FBXO17Q96EF6 278 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 DTNBP1Q96EV8 351 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 GMPPAQ96IJ6 420 aaPredicted RBP4.22□□□□□ -1.73
LIMS1-214ENST00000542845 VPS39Q96JC1 886 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 MEGF10Q96KG7 1140 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 SNX18Q96RF0 628 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 JMJD8Q96S16 334 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 DHRS9Q9BPW9 319 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 TBCDQ9BTW9 1192 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 TRMOQ9BU70 441 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 KIFC1Q9BW19 673 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 C1QTNF6Q9BXI9 259 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 KRTAP4-2Q9BYR5 136 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 BPESC1Q9GZL8 116 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 ROGDIQ9GZN7 287 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 EHD1Q9H4M9 534 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 C20orf96Q9NUD7 363 aaPredicted RBP4.22□□□□□ -1.73
LIMS1-214ENST00000542845 TAS2R13Q9NYV9 303 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 MED11Q9P086 117 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF490Q9ULM2 529 aaPredicted RBP4.22□□□□□ -1.73
LIMS1-214ENST00000542845 COA3Q9Y2R0 106 aaPredicted RBP4.22□□□□□ -1.73
LIMS1-214ENST00000542845 WBP11Q9Y2W2 641 aaKnown RBP4.22□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF175Q9Y473 711 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 PPIAL4AQ9Y536 164 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 FKBP7Q9Y680 259 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 NOTCH1P46531 2555 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 PCNX3Q9H6A9 2034 aa4.22□□□□□ -1.73
LIMS1-214ENST00000542845 LOC390937A0A1W2PQ73 354 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 A0A1W2PR80 420 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 OR2M5A3KFT3 312 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 H7C417 338 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 M0R1B8 84 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 NDUFS8O00217 210 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SCO2O43819 266 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CXCL13O43927 109 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 NPHS1O60500 1241 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SS18L1O75177 396 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF205O95201 554 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 AIFM1O95831 613 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 TUBBP07437 444 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 GPX3P22352 226 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 HIST1H1TP22492 207 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PIK3R1P27986 724 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PTPN7P35236 360 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 BUD31P41223 144 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 LIMS1P48059 325 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 RAP1GDS1P52306 607 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CDKN2DP55273 166 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 AP1S2P56377 157 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 DSCR4P56555 118 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 HILS1P60008 231 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PHC1P78364 1004 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 IGLV3-21P80748 117 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CHRNEQ04844 493 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 DUSP2Q05923 314 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 STX5Q13190 355 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SCGB2A2Q13296 93 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SNTA1Q13424 505 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 LSAMPQ13449 338 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 DDX39BQ13838 428 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 EXOSC7Q15024 291 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 P2RY6Q15077 328 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 GUSBP1Q15486 140 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 HIST2H2ACQ16777 129 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ADPRMQ3LIE5 342 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 HIST2H2AA3Q6FI13 130 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 OR4C11Q6IEV9 310 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 C11orf63Q6NUN7 778 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 FAHD2BQ6P2I3 314 aaPredicted RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CYP2R1Q6VVX0 501 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 Q6ZSR9 355 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 GSTA5Q7RTV2 222 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 NUFIP2Q7Z417 695 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 RNF175Q8N4F7 328 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SPATA6LQ8N4H0 392 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ZNF615Q8N8J6 731 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CLRN3Q8NCR9 226 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SRFBP1Q8NEF9 429 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 SLC35B2Q8TB61 432 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 C1orf54Q8WWF1 131 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ALG3Q92685 438 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 TMBIM1Q969X1 311 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ZBTB8AQ96BR9 441 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 IQCDQ96DY2 449 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 FAHD2AQ96GK7 314 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 DUX5Q96PT3 197 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CCT8L2Q96SF2 557 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ADOQ96SZ5 270 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 PELOQ9BRX2 385 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 C1QTNF5Q9BXJ0 243 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 ITPAQ9BY32 194 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 TSGA10Q9BZW7 698 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 OR10A4Q9H209 315 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CDC42EP4Q9H3Q1 356 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 UNKLQ9H9P5 680 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 CXorf21Q9HAI6 301 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 IARS2Q9NSE4 1012 aaKnown RBP4.21□□□□□ -1.74
LIMS1-214ENST00000542845 OXSMQ9NWU1 459 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 MED29Q9NX70 200 aa4.21□□□□□ -1.74
LIMS1-214ENST00000542845 IFNKQ9P0W0 207 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms