RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 IFNA8P32881 189 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 MAP4K2Q12851 820 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CCNJQ5T5M9 372 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 ARMC6Q6NXE6 501 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 SLC27A4Q6P1M0 643 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 AVL9Q8NBF6 648 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 RLN3Q8WXF3 142 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 FAM46AQ96IP4 442 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 CCDC3Q9BQI4 270 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 PRSS27Q9BQR3 290 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 TPK1Q9H3S4 243 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 HHATLQ9HCP6 504 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 ADAP2Q9NPF8 381 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 FAIMQ9NVQ4 179 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 TBCCD1Q9NVR7 557 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 IL20Q9NYY1 176 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NOX1Q9Y5S8 564 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CCRL2O00421 344 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 ARHGAP33O14559 1287 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 RDH16O75452 317 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 NKX2-2O95096 273 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 NID1P14543 1247 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 IGFBP4P22692 258 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 GABRA4P48169 554 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MAZP56270 477 aaKnown RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 IGLV3-21P80748 117 aaPredicted RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 DGAT2L6Q6ZPD8 337 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 BTLAQ7Z6A9 289 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MCATQ8IVS2 390 aaKnown RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 CLDN22Q8N7P3 220 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 PROKR2Q8NFJ6 384 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 TEX47Q8TBZ9 253 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MND1Q9BWT6 205 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MMP27Q9H306 513 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 UBE2ZQ9H832 354 aaPredicted RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 CNIH4Q9P003 139 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 CLEC2DQ9UHP7 191 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 THADAQ6YHU6 1953 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 LILRA5A6NI73 299 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 METTL12A8MUP2 240 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 KDM4EB2RXH2 506 aaPredicted RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 BRINP1O60477 761 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 FMO6PO60774 539 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MED26O95402 600 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 CAPZBP47756 277 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 TMED10P49755 219 aaKnown RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 PLAURQ03405 335 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 MED22Q15528 200 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 TSTQ16762 297 aaKnown RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 KBTBD8Q8NFY9 601 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 OR52I1Q8NGK6 324 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 OR9A4Q8NGU2 314 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 PIK3R3Q92569 461 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 LRR1Q96L50 414 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 LMF2Q9BU23 707 aaKnown RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 FGF20Q9NP95 211 aaPredicted RBP12.81□□□□□ -0.36
RTN3-210ENST00000540798 FBXO34Q9NWN3 711 aa12.81□□□□□ -0.36
RTN3-210ENST00000540798 TMEM265A0A087WTH1 108 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 CDHR4A6H8M9 788 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 CHST10O43529 356 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 SRPX2O60687 465 aaPredicted RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 HTR2AP28223 471 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 EXOSC7Q15024 291 aaKnown RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 ELOCQ15369 112 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 CHRDL2Q6WN34 429 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 DCDC5Q6ZRR9 648 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 MEX3DQ86XN8 651 aaKnown RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 ARL14Q8N4G2 192 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 TMEM255BQ8WV15 326 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 TPSD1Q9BZJ3 242 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 PCED1AQ9H1Q7 454 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 EVA1AQ9H8M9 152 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 ZNF223Q9UK11 482 aaPredicted RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 BLACEA4D250 179 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 FOXS1O43638 330 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 SOX30O94993 753 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 GPR68Q15743 365 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 DEFB110Q30KQ9 67 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 ZNF404Q494X3 552 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 SLC36A4Q6YBV0 504 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 COX18Q8N8Q8 333 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 CACYBPQ9HB71 228 aaKnown RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 SLC7A7Q9UM01 511 aa12.8□□□□□ -0.36
RTN3-210ENST00000540798 TP53BP1Q12888 1972 aaPredicted RBP12.8□□□□□ -0.36
RTN3-210ENST00000540798 SLC9B1P1A6NJY1 282 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 PRODHO43272 600 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 RAB36O95755 333 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 HBQ1P09105 142 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 CDH3P22223 829 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 SPHARQ15513 63 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 SMAD2Q15796 467 aaKnown RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 SNAPC1Q16533 368 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 TIMM50Q3ZCQ8 353 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 SOWAHCQ53LP3 525 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 C3orf38Q5JPI3 329 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 ZNF620Q6ZNG0 422 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 RANBP3LQ86VV4 465 aaPredicted RBP12.79□□□□□ -0.36
RTN3-210ENST00000540798 NRMQ8IXM6 262 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 DOK4Q8TEW6 326 aa12.79□□□□□ -0.36
RTN3-210ENST00000540798 OSTF1Q92882 214 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms