RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CPSF2Q9P2I0 782 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 XPR1Q9UBH6 696 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 RNF14Q9UBS8 474 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 B3GALT5Q9Y2C3 310 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 SNX24Q9Y343 169 aa10.36□□□□□ -0.75
CLSTN3-209ENST00000539982 ALPK2Q86TB3 2170 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 IGLV3-32A0A0A0MS00 114 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 DPRXA6NFQ7 191 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ELOA3DA6NLF2 546 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 SHISA8B8ZZ34 492 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 EIF3HO15372 352 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 CXCL13O43927 109 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 DLX3O60479 287 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ESRRBO95718 433 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 PDYNP01213 254 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 C2P06681 752 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 PYGBP11216 843 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 IL32P24001 234 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 AGTR1P30556 359 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 CASP9P55211 416 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 IRF9Q00978 393 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 BSPH1Q075Z2 132 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 C17orf67Q0P5P2 114 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 TSC22D1Q15714 1073 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ELOA3BQ3SY89 546 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 CYB5R2Q6BCY4 276 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 GALNT10Q86SR1 603 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ATG4DQ86TL0 474 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 CREG2Q8IUH2 290 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 CEP112Q8N8E3 955 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 KBTBD8Q8NFY9 601 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ELOA3Q8NG57 546 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 OR7G2Q8NG99 324 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ROBO4Q8WZ75 1007 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ADGRG7Q96K78 797 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 ADAD1Q96M93 576 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 GPR78Q96P69 363 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 BRF2Q9HAW0 419 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 FARSBQ9NSD9 589 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 FAIMQ9NVQ4 179 aa10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 YLPM1P49750 1951 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-209ENST00000539982 WIPF1O43516 503 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 KLHL2O95198 593 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 SLU7O95391 586 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 ZNF17P17021 662 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 MPIP34949 423 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 PAFAH1B1P43034 410 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 NUDT6P53370 316 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 RAC1P63000 192 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 SRSF2Q01130 221 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 RUNX1T1Q06455 604 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 TRAF3Q13114 568 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 P2RY6Q15077 328 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 DECR1Q16698 335 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 GGTA1PQ4G0N0 100 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 SH2D4BQ5SQS7 431 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 AGAP6Q5VW22 663 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 KLC3Q6P597 504 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 CLEC2AQ6UVW9 174 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 ESPNLQ6ZVH7 1005 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 ZNF619Q8N2I2 560 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 C1orf52Q8N6N3 182 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 PTGR2Q8N8N7 351 aaPredicted RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 MNS1Q8NEH6 495 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 OR4F6Q8NGB9 312 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 OR2V1Q8NHB1 315 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 SELENOMQ8WWX9 145 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 EXOSC8Q96B26 276 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 PHF21BQ96EK2 531 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 HBEGFQ99075 208 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 SENP1Q9P0U3 644 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 MRTO4Q9UKD2 239 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 PCTPQ9UKL6 214 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 VDAC3Q9Y277 283 aa10.34□□□□□ -0.75
CLSTN3-209ENST00000539982 CADP27708 2225 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 A0A087WZY1 265 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 A0A0J9YW62 118 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 SHISA9B4DS77 424 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 TNFSF11O14788 317 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 GMFGO60234 142 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 LMX1BO60663 402 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 RAMP1O60894 148 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 COQ9O75208 318 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 NTN1O95631 604 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 IL33O95760 270 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 ANGPTL1O95841 491 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 ADAP00813 363 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 OPN1LWP04000 364 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 PABPC4LP0CB38 370 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 SLC25A16P16260 332 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 SRD5A1P18405 259 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 PSMD4P55036 377 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 C21orf58P58505 322 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 PRR5P85299 388 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF155Q12901 538 aaPredicted RBP10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 CSTF3Q12996 717 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 TMEM201Q5SNT2 666 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 PDSS1Q5T2R2 415 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 HBMQ6B0K9 141 aa10.33□□□□□ -0.76
CLSTN3-209ENST00000539982 SEZ6L2Q6UXD5 910 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms