RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 NGFRP08138 427 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 HPGDP15428 266 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 ZNF17P17021 662 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 MAPK1P28482 360 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 LCN1P31025 176 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 HPCAL1P37235 193 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 RPL3P39023 403 aaKnown RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 RPL38P63173 70 aaKnown RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 KIAA0040Q15053 153 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 PRSS53Q2L4Q9 553 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 DEFB113Q30KQ7 82 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 ZCCHC12Q6PEW1 402 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 LRIG3Q6UXM1 1119 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 ZNF551Q7Z340 670 aaPredicted RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 MARCH3Q86UD3 253 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 MISPQ8IVT2 679 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 C10orf107Q8IVU9 208 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 RIBC1Q8N443 379 aaPredicted RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 OR6Y1Q8NGX8 325 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 EPS8L3Q8TE67 593 aaKnown RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 ZNF845Q96IR2 970 aaPredicted RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 EGLN2Q96KS0 407 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 FCRL1Q96LA6 429 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 FAM111AQ96PZ2 611 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 PINK1Q9BXM7 581 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 PLEKHF2Q9H8W4 249 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 RNF122Q9H9V4 155 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 NEUROD4Q9HD90 331 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 ELOVL5Q9NYP7 299 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 SH3BP4Q9P0V3 963 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 FIS1Q9Y3D6 152 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 ZNF337Q9Y3M9 751 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 TESMINQ9Y4I5 508 aa11.84□□□□□ -0.51
RTN3-207ENST00000536011 FLNAP21333 2647 aaKnown RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 PRRC2AP48634 2157 aaKnown RBP11.84□□□□□ -0.51
RTN3-207ENST00000536011 MED12LQ86YW9 2145 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 B4DXG7 233 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 EMC8O43402 210 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 AKAP10O43572 662 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 NDUFB5O43674 189 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 NKX2-2O95096 273 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 CD8BP10966 210 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 FOSL1P15407 271 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 SDC1P18827 310 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 CD79BP40259 229 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 KCNJ5P48544 419 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 SERPINB4P48594 390 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 ZNF41P51814 821 aaPredicted RBP11.83□□□□□ -0.52
RTN3-207ENST00000536011 PRKAG1P54619 331 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 SLC18A2Q05940 514 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 PCLAFQ15004 111 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 SGCBQ16585 318 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.83□□□□□ -0.52
RTN3-207ENST00000536011 GRAMD1BQ3KR37 738 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 KANK2Q63ZY3 851 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 PLXDC2Q6UX71 529 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 DDIASQ8IXT1 998 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 C4orf33Q8N1A6 199 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 METTL25Q8N6Q8 603 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 NUP43Q8NFH3 380 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 SLC9A6Q92581 669 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 HOXB13Q92826 284 aaPredicted RBP11.83□□□□□ -0.52
RTN3-207ENST00000536011 CIDECQ96AQ7 238 aaPredicted RBP11.83□□□□□ -0.52
RTN3-207ENST00000536011 STARD4Q96DR4 205 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 PGM2Q96G03 612 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 APOPT1Q96IL0 206 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 TSSK3Q96PN8 268 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 MED18Q9BUE0 208 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 TNFRSF12AQ9NP84 129 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 FANCFQ9NPI8 374 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 BEX4Q9NWD9 120 aaPredicted RBP11.83□□□□□ -0.52
RTN3-207ENST00000536011 FLRT3Q9NZU0 649 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 NTMQ9P121 344 aa11.83□□□□□ -0.52
RTN3-207ENST00000536011 GXYLT2A0PJZ3 443 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 C17orf51A8MQB3 221 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 ALG1L2C9J202 215 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 SCDO00767 359 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 LSM1O15116 133 aaKnown RBP11.82□□□□□ -0.52
RTN3-207ENST00000536011 NPHS1O60500 1241 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 SOX30O94993 753 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 PLGP00747 810 aaPredicted RBP11.82□□□□□ -0.52
RTN3-207ENST00000536011 ALOX5P09917 674 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 LINC00032P0C843 101 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 POU2F1P14859 743 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 ME2P23368 584 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 SERPINB5P36952 375 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 FRKP42685 505 aaPredicted RBP11.82□□□□□ -0.52
RTN3-207ENST00000536011 PRIM2P49643 509 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 SIRPAP78324 504 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 FOXD4Q12950 439 aaPredicted RBP11.82□□□□□ -0.52
RTN3-207ENST00000536011 PDE7AQ13946 482 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 PON3Q15166 354 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 POU4F3Q15319 338 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 GALNTL6Q49A17 601 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 ANKRD26P1Q6NSI1 321 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 MFSD12Q6NUT3 480 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 VWA1Q6PCB0 445 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 Q6ZSR9 355 aa11.82□□□□□ -0.52
RTN3-207ENST00000536011 WDR75Q8IWA0 830 aaKnown RBP11.82□□□□□ -0.52
RTN3-207ENST00000536011 NATD1Q8N6N6 113 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms