RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FAM157BP0CG42 384 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 IFNA8P32881 189 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 ERVK-21P61565 698 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 IL18Q14116 193 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 TATDN3Q17R31 274 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 TMEM44Q2T9K0 475 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 FAM111BQ6SJ93 734 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 METAP1DQ6UB28 335 aaPredicted RBP17.98■□□□□ 0.47
VPS28-213ENST00000530983 PAMR1Q6UXH9 720 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 MBOAT2Q6ZWT7 520 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 SIRT6Q8N6T7 355 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 C19orf18Q8NEA5 215 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 SUN5Q8TC36 379 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 TIMM29Q9BSF4 260 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 KLHL28Q9NXS3 571 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 POLHQ9Y253 713 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 PCDHGB7Q9Y5F8 929 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 C2orf92A0A1B0GVN3 265 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 CD8B2A6NJW9 211 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 SOCS6O14544 535 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 CD8BP10966 210 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 PSKH1P11801 424 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 PTNP21246 168 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 HTR2BP41595 481 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 AGERQ15109 404 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 ZNF322Q6U7Q0 402 aaPredicted RBP17.98■□□□□ 0.47
VPS28-213ENST00000530983 FRRS1Q6ZNA5 592 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 TMEM91Q6ZNR0 172 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 SLC16A11Q8NCK7 471 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 CHFRQ96EP1 664 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 HINT3Q9NQE9 182 aaKnown RBP17.98■□□□□ 0.47
VPS28-213ENST00000530983 PRKAG2Q9UGJ0 569 aa17.98■□□□□ 0.47
VPS28-213ENST00000530983 ZFR2Q9UPR6 939 aaKnown RBP17.98■□□□□ 0.47
VPS28-213ENST00000530983 PRR19A6NJB7 356 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ASGR2P07307 311 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ALAS2P22557 587 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ABATP80404 500 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 RIN1Q13671 783 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 HEPHL1Q6MZM0 1159 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 KLBQ86Z14 1044 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 DUSP18Q8NEJ0 188 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 TEX12Q9BXU0 123 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 PHPT1Q9NRX4 125 aaPredicted RBP17.97■□□□□ 0.47
VPS28-213ENST00000530983 ASB6Q9NWX5 421 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 CDH10Q9Y6N8 788 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ZNF780BQ9Y6R6 833 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 FAM183AA6NL82 134 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 J3QRE1 110 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 CEACAM5P06731 702 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 WASP42768 502 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 TSFMP43897 325 aaKnown RBP17.97■□□□□ 0.47
VPS28-213ENST00000530983 SNRPNP63162 240 aaKnown RBP17.97■□□□□ 0.47
VPS28-213ENST00000530983 LRRC32Q14392 662 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 CST6Q15828 149 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 CPOQ8IVL8 374 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 PEX5LQ8IYB4 626 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 MFSD9Q8NBP5 474 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 SRFBP1Q8NEF9 429 aaKnown RBP17.97■□□□□ 0.47
VPS28-213ENST00000530983 OR2T33Q8NG76 320 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 OR7G2Q8NG99 324 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ANGPTL6Q8NI99 470 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ADAMTS15Q8TE58 950 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 KCNJ15Q99712 375 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 TMEM43Q9BTV4 400 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 JAM3Q9BX67 310 aa17.97■□□□□ 0.47
VPS28-213ENST00000530983 ZNF443Q9Y2A4 671 aaPredicted RBP17.97■□□□□ 0.47
VPS28-213ENST00000530983 C2orf16Q68DN1 1984 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 LYRM1O43325 122 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 CPNE3O75131 537 aaKnown RBP17.96■□□□□ 0.47
VPS28-213ENST00000530983 OR5F1O95221 314 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 PTBP1P26599 531 aaKnown RBP eCLIP17.96■□□□□ 0.47
VPS28-213ENST00000530983 ATP6V1E1P36543 226 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 PDGFRLQ15198 375 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 PUS10Q3MIT2 529 aaKnown RBP17.96■□□□□ 0.47
VPS28-213ENST00000530983 B3GLCTQ6Y288 498 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 DGLUCYQ7Z3D6 616 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 GANCQ8TET4 914 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 CDS1Q92903 461 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 SMARCD2Q92925 531 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 SAMD8Q96LT4 415 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 CITED4Q96RK1 184 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 ISG20L2Q9H9L3 353 aaKnown RBP17.96■□□□□ 0.47
VPS28-213ENST00000530983 TNFRSF10DQ9UBN6 386 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 SLC7A7Q9UM01 511 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 ALG5Q9Y673 324 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 CLCA3PQ9Y6N3 262 aa17.96■□□□□ 0.47
VPS28-213ENST00000530983 SCAMP1O15126 338 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 NDUFV2P19404 249 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 GCGRP47871 477 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 BTN3A2P78410 334 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 ZNF425Q6IV72 752 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 MFSD12Q6NUT3 480 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 MZT2BQ6NZ67 158 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 NR2C2APQ86WQ0 139 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 NRROSQ86YC3 692 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 TCTE3Q8IZS6 198 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 KCT2Q8NC54 265 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 UPRTQ96BW1 309 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 C10orf90Q96M02 699 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 NLGN3Q9NZ94 848 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms