RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 HSDL2Q6YN16 418 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SLC29A4Q7RTT9 530 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 PPP1R32Q7Z5V6 425 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 CLEC4FQ8N1N0 589 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 Q8N3U1 123 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SLC15A4Q8N697 577 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SLC16A11Q8NCK7 471 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 SIMC1Q8NDZ2 872 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 OR2T12Q8NG77 320 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 OR52E4Q8NGH9 312 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 C16orf52Q8NHV5 167 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 NUBPLQ8TB37 319 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 FAM110BQ8TC76 370 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 XAGE5Q8WWM1 108 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 ADIPOR1Q96A54 375 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 HSPBAP1Q96EW2 488 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 WBP1Q96G27 269 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 C16orf58Q96GQ5 468 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 LCORQ96JN0 433 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 FER1L6-AS2Q96M78 137 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 MS4A4EQ96PG1 132 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 TRNT1Q96Q11 434 aaKnown RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 RAB3IPQ96QF0 476 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 OR7D2Q96RA2 312 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 CNPPD1Q9BV87 410 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 OR51I1Q9H343 314 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 MUC13Q9H3R2 512 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 IKZF5Q9H5V7 419 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 GORASP2Q9H8Y8 452 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 MTHFD2LQ9H903 347 aaPredicted RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 ANKRA2Q9H9E1 313 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 POLE3Q9NRF9 147 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 P4HTMQ9NXG6 502 aa6.84□□□□□ -1.31
CD44-228ENST00000528455 MRTO4Q9UKD2 239 aaKnown RBP6.84□□□□□ -1.31
CD44-228ENST00000528455 FASNP49327 2511 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 IGHV3-20A0A0C4DH32 117 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 A0A0G2JPF8 293 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 FAM220BPB1ANY3 271 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HNRNPCL2B2RXH8 293 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HNRNPCL3B7ZW38 293 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 TO15178 435 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 ACOX3O15254 700 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SEC24DO94855 1032 aaPredicted RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 C1QCP02747 245 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SERPINA7P05543 415 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HNRNPCL4P0DMR1 293 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CT45A8P0DMV1 189 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CT45A9P0DMV2 189 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 OR12D1P0DN82 309 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 ETFAP13804 333 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 NQO1P15559 274 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 FUT4P22083 530 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 LCN1P31025 176 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 OTX2P32243 289 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 KDELR2P33947 212 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 GABRA3P34903 492 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 PTGER1P34995 402 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 KHKP50053 298 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 RRADP55042 308 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 FOXL2P58012 376 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 DSTNP60981 165 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 RPS18P62269 152 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 EEF1A2Q05639 463 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 BNIP2Q12982 314 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CHAF1BQ13112 559 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 DUSP8Q13202 625 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CYP51A1Q16850 503 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 VMACQ2NL98 169 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 BTBD16Q32M84 506 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CT45A2Q5DJT8 189 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 INTS11Q5TA45 600 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 FAM69BQ5VUD6 431 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HLA-DQA1Q5Y7H0 255 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 GLYATQ6IB77 296 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 REEP3Q6NUK4 255 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 JMJD6Q6NYC1 403 aaPredicted RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 ANGPTL8Q6UXH0 198 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 LRRC74BQ6ZQY2 392 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CCDC80Q76M96 950 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 PTOV1Q86YD1 416 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HPS6Q86YV9 775 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 ULK2Q8IYT8 1036 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 MICU2Q8IYU8 434 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 HORMAD2Q8N7B1 307 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 C11orf65Q8NCR3 313 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CHDHQ8NE62 594 aaPredicted RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 PNPT1Q8TCS8 783 aaKnown RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 GPR151Q8TDV0 419 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SLC38A5Q8WUX1 472 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SLC9A6Q92581 669 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 NCLNQ969V3 563 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 C8orf44Q96CB5 159 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 ASB9Q96DX5 294 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SLC35G5Q96KT7 338 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 BTBD9Q96Q07 612 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SDF2Q99470 211 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 KCTD14Q9BQ13 255 aaPredicted RBP6.83□□□□□ -1.32
CD44-228ENST00000528455 G6PC3Q9BUM1 346 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 SPATA5L1Q9BVQ7 753 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 BTBD2Q9BX70 525 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms