RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SLX4IPQ5VYV7 408 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 B3GNT6Q6ZMB0 384 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 PLEKHM3Q6ZWE6 761 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 P3H2Q8IVL5 708 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 ALDH16A1Q8IZ83 802 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 IPCEF1Q8WWN9 437 aaPredicted RBP19.2■□□□□ 0.66
VPS28-209ENST00000528142 PTCHD1Q96NR3 888 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 LHPPQ9H008 270 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 OR10A5Q9H207 317 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 KMT2EQ8IZD2 1858 aa19.2■□□□□ 0.66
VPS28-209ENST00000528142 A0A1W2PQM1 296 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 FAM86C2PA6NEL3 165 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 SOX14O95416 240 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 DCKP27707 260 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 IFNA8P32881 189 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 PGDP52209 483 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 PLAURQ03405 335 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 EMX1Q04741 257 aaPredicted RBP19.19■□□□□ 0.66
VPS28-209ENST00000528142 TUBA3CQ13748 450 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 GDF7Q7Z4P5 450 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 C16orf52Q8NHV5 167 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 PTPMT1Q8WUK0 201 aaPredicted RBP19.19■□□□□ 0.66
VPS28-209ENST00000528142 MUL1Q969V5 352 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 SLC41A3Q96GZ6 507 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 YIPF2Q9BWQ6 316 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 CCDC90BQ9GZT6 254 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 CCNB1IP1Q9NPC3 277 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 IMPAD1Q9NX62 359 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 PI4KAP42356 2102 aa19.19■□□□□ 0.66
VPS28-209ENST00000528142 NTN1O95631 604 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ANKRD34CP0C6C1 535 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 CT45A8P0DMV1 189 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 CT45A9P0DMV2 189 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 PRG2P13727 222 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 CCL7P80098 99 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 DECR1Q16698 335 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 FLYWCH1Q4VC44 716 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 CT45A2Q5DJT8 189 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 C12orf73Q69YU5 71 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 QSOX2Q6ZRP7 698 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 PRICKLE2Q7Z3G6 844 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ARHGAP22Q7Z5H3 698 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 NKAIN4Q8IVV8 208 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ZBTB44Q8NCP5 570 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 RCBTB1Q8NDN9 531 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ISOC1Q96CN7 298 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ZNF304Q9HCX3 659 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 FKBP14Q9NWM8 211 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 PSORS1C1Q9UIG5 152 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 CABIN1Q9Y6J0 2220 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ASXL3Q9C0F0 2248 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 FRYLO94915 3013 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 A0A1B0GX78 115 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 M0R129 80 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 RGS10O43665 173 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 BCAS1O75363 584 aaPredicted RBP19.18■□□□□ 0.66
VPS28-209ENST00000528142 ATXN8OSP0DMR3 200 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 TNNI3P19429 210 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 HOXD12P35452 270 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 TOR1AIP2Q8NFQ8 470 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ZNF420Q8TAQ5 688 aaPredicted RBP19.18■□□□□ 0.66
VPS28-209ENST00000528142 FAR1Q8WVX9 515 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 ACOT11Q8WXI4 607 aaPredicted RBP19.18■□□□□ 0.66
VPS28-209ENST00000528142 DOK1Q99704 481 aa19.18■□□□□ 0.66
VPS28-209ENST00000528142 POLR2J2Q9GZM3 115 aaKnown RBP19.18■□□□□ 0.66
VPS28-209ENST00000528142 TTC36A6NLP5 189 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 C17orf105B2RV13 164 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 PATE3B3GLJ2 98 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 MPZL2O60487 215 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 MT-ND2P03891 347 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 GSTM3P21266 225 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 DRD5P21918 477 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 FBLP22087 321 aaKnown RBP19.17■□□□□ 0.66
VPS28-209ENST00000528142 HTR2AP28223 471 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 OMPP47874 163 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 EFNA3P52797 238 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 ANGPT1Q15389 498 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 GPR107Q5VW38 600 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 ZNF730Q6ZMV8 503 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 PRSS48Q7RTY5 328 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 RANBP3LQ86VV4 465 aaPredicted RBP19.17■□□□□ 0.66
VPS28-209ENST00000528142 EID2Q8N6I1 236 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 ZSCAN1Q8NBB4 408 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 OR7G1Q8NGA0 311 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 GNPDA2Q8TDQ7 276 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 TSLPQ969D9 159 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 SENP5Q96HI0 755 aaPredicted RBP19.17■□□□□ 0.66
VPS28-209ENST00000528142 DPYSL5Q9BPU6 564 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 Q9N2J8 555 aa19.17■□□□□ 0.66
VPS28-209ENST00000528142 NPIPB9F8W1W9 429 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 H3BN98 237 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 FMO6PO60774 539 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 RPLP0P05388 317 aaKnown RBP19.16■□□□□ 0.66
VPS28-209ENST00000528142 GKN3PP0CG01 181 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 PCSK6P29122 969 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 IFNGR2P38484 337 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 MASP1P48740 699 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 RHAGQ02094 409 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 AHSA2Q719I0 299 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 OR4D9Q8NGE8 314 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms