RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KLHL38Q2WGJ6 581 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 AARDQ4LEZ3 155 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ZCWPW2Q504Y3 356 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 HSP90AA5PQ58FG0 334 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 C12orf60Q5U649 245 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ZYG11AQ6WRX3 759 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TMEM182Q6ZP80 229 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 USP50Q70EL3 339 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 SPATA19Q7Z5L4 167 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GPR142Q7Z601 462 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ERO1BQ86YB8 467 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 WDR49Q8IV35 697 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 THNSL1Q8IYQ7 743 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 OR10Z1Q8NGY1 313 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 LILRB4Q8NHJ6 448 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GOT1L1Q8NHS2 421 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 CDC26Q8NHZ8 85 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TEX47Q8TBZ9 253 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 DDI1Q8WTU0 396 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 P3H4Q92791 437 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CORO2AQ92828 525 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 MR1Q95460 341 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 SLC35C1Q96A29 364 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CIDECQ96AQ7 238 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 TUBGCP3Q96CW5 907 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 BPIFA2Q96DR5 249 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 MSANTD3Q96H12 275 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TTC25Q96NG3 672 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 DHRS9Q9BPW9 319 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 SELENOSQ9BQE4 189 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TBCDQ9BTW9 1192 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 KRT23Q9C075 422 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 YIPF3Q9GZM5 350 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 NDEL1Q9GZM8 345 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 LSG1Q9H089 658 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 DPH5Q9H2P9 285 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 AZI2Q9H6S1 392 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 NANOGQ9H9S0 305 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 LMAN1LQ9HAT1 526 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 SLC38A10Q9HBR0 1119 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 C12orf4Q9NQ89 552 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 HPS4Q9NQG7 708 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 EURLQ9NYK6 297 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 IL37Q9NZH6 218 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CD300AQ9UGN4 299 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 APOBEC3BQ9UH17 382 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 SBNO1A3KN83 1393 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 MYOM3Q5VTT5 1437 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 POLA1P09884 1462 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 NLRP1Q9C000 1473 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 KIAA1217Q5T5P2 1943 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 IGHV3OR16-12A0A075B7B8 117 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TRAV34A0A0B4J273 112 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 PVALEFA0A1B0GWK0 134 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 HEATR9A2RTY3 570 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 MIF4GDA9UHW6 222 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 TMEM114B3SHH9 223 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 H0YIV9 168 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 XPO1O14980 1071 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 RAD51BO15315 384 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 MAGEB3O15480 346 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 P2RX6O15547 441 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 GATCO43716 136 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 STX10O60499 249 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SHOX2O60902 331 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 NOL3O60936 208 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 NME6O75414 186 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 SUPT3HO75486 399 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 KLHL2O95198 593 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 IFNA14P01570 189 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 HEXBP07686 556 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 FHP07954 510 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 KRT7P08729 469 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 KRT3P12035 628 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 PSMA2P25787 234 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 CDX1P47902 265 aaPredicted RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 KCNJ1P48048 391 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 TMED10P49755 219 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 ARHGDIAP52565 204 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 NAGLUP54802 743 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SLC26A5P58743 744 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SRP54P61011 504 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 TSPAN5P62079 268 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 BEX3Q00994 111 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 OTUD4Q01804 1114 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 SCRN3Q0VDG4 424 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SMARCB1Q12824 385 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 CUL2Q13617 745 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 COTL1Q14019 142 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 DOC2AQ14183 400 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 MPPED2Q15777 294 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 IL17AQ16552 155 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 LRIT3Q3SXY7 679 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 CCNJQ5T5M9 372 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 SHEQ5VZ18 495 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 PM20D1Q6GTS8 502 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 ERICH5Q6P6B1 374 aa1.56□□□□□ -2.16
NUP54-208ENST00000508604 ALKBH5Q6P6C2 394 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 SHQ1Q6PI26 577 aaKnown RBP1.56□□□□□ -2.16
NUP54-208ENST00000508604 BTNL8Q6UX41 500 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms