RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR4F15Q8NGB8 312 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 NR4A3Q92570 626 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TIMM29Q9BSF4 260 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SARGQ9BW04 601 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 BTBD1Q9H0C5 482 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 C6orf106Q9H6K1 298 aaPredicted RBP15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 GDE1Q9NZC3 331 aa15.03■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 A0A0B4J293 547 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 FCMRO60667 390 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CEACAM5P06731 702 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TRAPPC2P0DI81 140 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TRAPPC2BP0DI82 140 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 WASP42768 502 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 CDH11P55287 796 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 DAB2P98082 770 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TGM3Q08188 693 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 MADCAM1Q13477 382 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SMAD4Q13485 552 aaKnown RBP15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 LTB4RQ15722 352 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TBRG1Q3YBR2 411 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 C6orf132Q5T0Z8 1188 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 PDZK1Q5T2W1 519 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 TYW3Q6IPR3 259 aaKnown RBP15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 KAT2AQ92830 837 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 RNF31Q96EP0 1072 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SLC35A4Q96G79 324 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 ANKRD19PQ9H560 264 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SCN3AQ9NY46 2000 aa15.02■□□□□ -0
MSH5-SAPCD1-208ENST00000498473 SHISA3A0PJX4 238 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRKCAP17252 672 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FPR3P25089 353 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TEAD1P28347 426 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MPIP34949 423 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KIR2DL3P43628 341 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 AVPR1BP47901 424 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PDX1P52945 283 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ARFIP1P53367 373 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SNRPNP63162 240 aaKnown RBP15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C19orf57Q0VDD7 668 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CST6Q15828 149 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DECR1Q16698 335 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PYDC2Q56P42 97 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC38A6Q8IZM9 456 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 VWA5B2Q8N398 1253 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TMEM145Q8NBT3 493 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 BBS1Q8NFJ9 593 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PIGXQ8TBF5 258 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CHFRQ96EP1 664 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DMRTB1Q96MA1 342 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RAB11FIP5Q9BXF6 653 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PPP1R3EQ9H7J1 279 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 DDX28Q9NUL7 540 aaKnown RBP15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GIMAP4Q9NUV9 329 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 IL20Q9NYY1 176 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NDRG2Q9UN36 371 aaKnown RBP15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 EXOGQ9Y2C4 368 aaKnown RBP15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GSTK1Q9Y2Q3 226 aa15.02□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PIP5K1CO60331 668 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CCNYL3P0C7X3 344 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 APEX1P27695 318 aaKnown RBP15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRKAR1BP31321 381 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 STAT5AP42229 794 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 P2RX3P56373 397 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ABATP80404 500 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 FZD5Q13467 585 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZFP69Q49AA0 526 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PRR23CQ6ZRP0 262 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 MFSD9Q8NBP5 474 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ATP6V1C2Q8NEY4 427 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ACOT11Q8WXI4 607 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC7A6Q92536 515 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 AP3S1Q92572 193 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RNF170Q96K19 258 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PHPT1Q9NRX4 125 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 A6NL46 340 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CSF2P04141 144 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GPR4P46093 362 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 KRT33BQ14525 404 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 PDGFRLQ15198 375 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 VASNQ6EMK4 673 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ZNF425Q6IV72 752 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HEPHL1Q6MZM0 1159 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GDF7Q7Z4P5 450 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 NRMQ8IXM6 262 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 GJD3Q8N144 294 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 HDDC3Q8N4P3 179 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 TOR1AIP2Q8NFQ8 470 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 JPH3Q8WXH2 748 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 OSTF1Q92882 214 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 C10orf90Q96M02 699 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ATF6BQ99941 703 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 ACTRT3Q9BYD9 372 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 B3GNT4Q9C0J1 378 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 RSPH9Q9H1X1 276 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CALML5Q9NZT1 146 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 COMMD3Q9UBI1 195 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 SLC13A4Q9UKG4 626 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CLCA2Q9UQC9 943 aa15.01□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 A0A1W2PP55 124 aa15□□□□□ -0.01
MSH5-SAPCD1-208ENST00000498473 CCDC182A6NF36 153 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms