RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MFSD12Q6NUT3 480 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 FAM180BQ6P0A1 224 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 ESPNLQ6ZVH7 1005 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 ATG4DQ86TL0 474 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 TDRPQ86YL5 185 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 CTAGE4Q8IX94 777 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 CCDC116Q8IYX3 515 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 GTPBP8Q8N3Z3 284 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 OR9A2Q8NGT5 310 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 OR2V1Q8NHB1 315 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 PROX1Q92786 737 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 KAT2AQ92830 837 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 KISS1RQ969F8 398 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 MTBPQ96DY7 904 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 SHCBP1LQ9BZQ2 653 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 C12orf49Q9H741 205 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 BRF2Q9HAW0 419 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 GP6Q9HCN6 339 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 HHATLQ9HCP6 504 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 SLC12A4Q9UP95 1085 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 PPP2R2CQ9Y2T4 447 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 MEGF8Q7Z7M0 2845 aa12.66□□□□□ -0.38
PRPF40A-211ENST00000493468 A0A087WZY1 265 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 CXCL13O43927 109 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 COQ9O75208 318 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 NME6O75414 186 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 SIX3O95343 332 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 GSTA2P09210 222 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 CSF3P09919 207 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 PABPC4LP0CB38 370 aaKnown RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 ARL1P40616 181 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 GZMKP49863 264 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 CCNG1P51959 295 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 CDH11P55287 796 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 RAC1P63000 192 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 IRX1P78414 480 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 C17orf67Q0P5P2 114 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 TRAF3Q13114 568 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 ACAP2Q15057 778 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 DECR1Q16698 335 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 MEX3DQ86XN8 651 aaKnown RBP12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 ARIH2OSQ8N7S6 290 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 RNF128Q8TEB7 428 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 KCTD4Q8WVF5 259 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 ATP6V1E2Q96A05 226 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 RADILQ96JH8 1075 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 CACNG6Q9BXT2 260 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 ELOVL6Q9H5J4 265 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 PFDN4Q9NQP4 134 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 FLRT3Q9NZU0 649 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 KCNS2Q9ULS6 477 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 SNX12Q9UMY4 172 aa12.65□□□□□ -0.38
PRPF40A-211ENST00000493468 DYSFO75923 2080 aa12.65□□□□□ -0.39
PRPF40A-211ENST00000493468 SHISA8B8ZZ34 492 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 EIF3HO15372 352 aaKnown RBP eCLIP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 SPRY1O43609 319 aaPredicted RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 RAMP1O60894 148 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 SLITRK5O94991 958 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 IL33O95760 270 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 HNF1AP20823 631 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 PSMA4P25789 261 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 PSMD4P55036 377 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 C21orf58P58505 322 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 PRR5P85299 388 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF155Q12901 538 aaPredicted RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 ITGADQ13349 1161 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 SQLEQ14534 574 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 RNPS1Q15287 305 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 TSC22D1Q15714 1073 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 TMEM201Q5SNT2 666 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 FAM120AOSQ5T036 256 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 PDSS1Q5T2R2 415 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 UBAP2Q5T6F2 1119 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 FAM166AQ6J272 317 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 MARCH3Q86UD3 253 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 FAM9CQ8IZT9 166 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF619Q8N2I2 560 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 BANPQ8N9N5 519 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 OR7G2Q8NG99 324 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 C10orf105Q8TEF2 133 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 FAM168AQ92567 244 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 ZBTB8AQ96BR9 441 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 PLA2G12AQ9BZM1 189 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 CBLN4Q9NTU7 201 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 NMRK1Q9NWW6 199 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 KLHL13Q9P2N7 655 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 MRTO4Q9UKD2 239 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 VDAC3Q9Y277 283 aa12.64□□□□□ -0.39
PRPF40A-211ENST00000493468 TENM1Q9UKZ4 2725 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 A0A087WV62 115 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 H7C417 338 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 TNFSF11O14788 317 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 ANGPTL1O95841 491 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 USF1P22415 310 aaPredicted RBP12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 TTKP33981 857 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 IRF9Q00978 393 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF239Q16600 458 aaKnown RBP12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 HBMQ6B0K9 141 aa12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 BHLHA15Q7RTS1 189 aaPredicted RBP12.63□□□□□ -0.39
PRPF40A-211ENST00000493468 CCDC25Q86WR0 208 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms