RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GALNT10Q86SR1 603 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SERPINA11Q86U17 422 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 RBMXL3Q8N7X1 1067 aaKnown RBP9.45□□□□□ -0.9
SKA1-204ENST00000488454 LSM14AQ8ND56 463 aaKnown RBP9.45□□□□□ -0.9
SKA1-204ENST00000488454 PSD4Q8NDX1 1056 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 MDS2Q8NDY4 140 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 OR10A6Q8NH74 314 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 PAQR8Q8TEZ7 354 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SPATA9Q9BWV2 254 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 TBL1XR1Q9BZK7 514 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 IKZF5Q9H5V7 419 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 PIF1Q9H611 641 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 KAT8Q9H7Z6 458 aaKnown RBP9.45□□□□□ -0.9
SKA1-204ENST00000488454 MTHFD2LQ9H903 347 aaPredicted RBP9.45□□□□□ -0.9
SKA1-204ENST00000488454 HHATLQ9HCP6 504 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 A4GALTQ9NPC4 353 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 POLE3Q9NRF9 147 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 SDHAF3Q9NRP4 125 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 UBQLN4Q9NRR5 601 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 ADA2Q9NZK5 511 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 KLRF1Q9NZS2 232 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 PCDHGB6Q9Y5F9 930 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 MED13Q9UHV7 2174 aa9.45□□□□□ -0.9
SKA1-204ENST00000488454 MAP1BP46821 2468 aaKnown RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 A0A0G2JPF8 293 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ANKRD33BA6NCL7 494 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PRAMEF25A6NGN4 478 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 HNRNPCL2B2RXH8 293 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 HNRNPCL3B7ZW38 293 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 H3BNH8 94 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 FXYD1O00168 92 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 EBAG9O00559 213 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PEX1O43933 1283 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 NME2P1O60361 137 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 HNRNPCL1O60812 293 aaKnown RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 ICOSLGO75144 302 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 TNFRSF21O75509 655 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ATP5HO75947 161 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 UBOX5O94941 541 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 H6PDO95479 791 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 IGKV1D-16P01601 117 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 BCHEP06276 602 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 GUSBP08236 651 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 HNRNPCL4P0DMR1 293 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CCL3P10147 92 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ENDOUP21128 410 aaKnown RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 TBXA2RP21731 343 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 NME2P22392 152 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CASP3P42574 277 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 MASP1P48740 699 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CD97P48960 835 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 RASSF2P50749 326 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ATP12AP54707 1039 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 KCNJ2P63252 427 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SLC25A3Q00325 362 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CDK6Q00534 326 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SNTA1Q13424 505 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SELPLGQ14242 412 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ZNF630Q2M218 657 aaPredicted RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 PLEKHN1Q494U1 663 aaPredicted RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 NADK2Q4G0N4 442 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PRAMEF20Q5VT98 475 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SLC30A6Q6NXT4 461 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 LYPD4Q6UWN0 246 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 GALNTL5Q7Z4T8 443 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 IFNEQ86WN2 208 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ZNF227Q86WZ6 799 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 KRT73Q86Y46 540 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SLC30A8Q8IWU4 369 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PGAM4Q8N0Y7 254 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 FBXW8Q8N3Y1 598 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SVOPQ8N4V2 548 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ANKFN1Q8N957 763 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 C11orf65Q8NCR3 313 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SLC38A5Q8WUX1 472 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PMM1Q92871 262 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 HGDQ93099 445 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 MAL2Q969L2 176 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 PNPLA2Q96AD5 504 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SCMH1Q96GD3 660 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 NODALQ96S42 347 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 FAM173AQ9BQD7 235 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 GPATCH1Q9BRR8 931 aaKnown RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 DOHHQ9BU89 302 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 TRIM8Q9BZR9 551 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 TMEM38AQ9H6F2 299 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 SPAG4Q9NPE6 437 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CNOT11Q9UKZ1 510 aaKnown RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 MKLN1Q9UL63 735 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 ABCG2Q9UNQ0 655 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CSAG2Q9Y5P2 127 aa9.44□□□□□ -0.9
SKA1-204ENST00000488454 CHCHD2Q9Y6H1 151 aaPredicted RBP9.44□□□□□ -0.9
SKA1-204ENST00000488454 LOC400499M0QZD8 3231 aa9.43□□□□□ -0.9
SKA1-204ENST00000488454 NUP214P35658 2090 aaPredicted RBP9.43□□□□□ -0.9
SKA1-204ENST00000488454 G3V3Y1 287 aa9.43□□□□□ -0.9
SKA1-204ENST00000488454 GTPBP1O00178 669 aaKnown RBP9.43□□□□□ -0.9
SKA1-204ENST00000488454 ATXN7O15265 892 aaPredicted RBP9.43□□□□□ -0.9
SKA1-204ENST00000488454 FCMRO60667 390 aa9.43□□□□□ -0.9
SKA1-204ENST00000488454 DNAJA2O60884 412 aa9.43□□□□□ -0.9
SKA1-204ENST00000488454 GMNNO75496 209 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms