RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 CRLF1O75462 422 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 PSMG1O95456 288 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 ESRRBO95718 433 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 THBDP07204 575 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 IFI6P09912 130 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 TPD52P55327 224 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-227ENST00000485102 CLDN20P56880 219 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 CLCQ05315 142 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 CAPRIN1Q14444 709 aaKnown RBP11.69□□□□□ -0.54
HDAC6-227ENST00000485102 PON3Q15166 354 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 KRT71Q3SY84 523 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 SPIN4Q56A73 249 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 RAET1LQ5VY80 246 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 FAM9CQ8IZT9 166 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 OR6K3Q8NGY3 331 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 TMEM171Q8WVE6 324 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 CCDC126Q96EE4 140 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 C1GALT1C1Q96EU7 318 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 ZNF382Q96SR6 550 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 CXorf56Q9H5V9 222 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 HHATLQ9HCP6 504 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 PFDN4Q9NQP4 134 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 PAQR5Q9NXK6 330 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-227ENST00000485102 MED11Q9P086 117 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 STOML1Q9UBI4 398 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 C19orf53Q9UNZ5 99 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-227ENST00000485102 OR10H1Q9Y4A9 318 aa11.69□□□□□ -0.54
HDAC6-227ENST00000485102 TTC36A6NLP5 189 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ATP8B1O43520 1251 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 PCDH7O60245 1069 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 GLRA3O75311 464 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ULK1O75385 1050 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 NME6O75414 186 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 AQP8O94778 261 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 OR4F21O95013 312 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 H2AFXP16104 143 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 TAC1P20366 129 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 SIRPAP78324 504 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 C17orf67Q0P5P2 114 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 CASP8Q14790 479 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 DECR1Q16698 335 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 CCDC153Q494R4 210 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ADAM5Q6NVV9 412 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 STAC2Q6ZMT1 411 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ZNF704Q6ZNC4 412 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 RPS27LQ71UM5 84 aaKnown RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 C16orf78Q8WTQ4 265 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 DUSP19Q8WTR2 217 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 EXOSC8Q96B26 276 aaKnown RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ZC3HAV1LQ96H79 300 aaKnown RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 GMPPAQ96IJ6 420 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 HBEGFQ99075 208 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 ACPTQ9BZG2 426 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 RTN4RQ9BZR6 473 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 KLHL4Q9C0H6 718 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 FANCFQ9NPI8 374 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 GLRX2Q9NS18 164 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 MRTO4Q9UKD2 239 aaKnown RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 GRID1Q9ULK0 1009 aa11.68□□□□□ -0.54
HDAC6-227ENST00000485102 WBP11Q9Y2W2 641 aaKnown RBP11.68□□□□□ -0.54
HDAC6-227ENST00000485102 MXRA5Q9NR99 2828 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 GNG14A0A1W2PPG7 69 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 HS3ST1O14792 307 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 SCO2O43819 266 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 SS18L1O75177 396 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 IL33O95760 270 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 CHN1P15882 459 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 TSPAN8P19075 237 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 PSMB1P20618 241 aaKnown RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 DDCP20711 480 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 TCEA1P23193 301 aaKnown RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 TIA1P31483 386 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 CLK3P49761 638 aaKnown RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 PSMD4P55036 377 aaKnown RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 PRR5P85299 388 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 KRTAP1-1Q07627 177 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 ACSM2AQ08AH3 577 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 ETFDHQ16134 617 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 CEP85LQ5SZL2 805 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 ACSM2BQ68CK6 577 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 ANKRD34AQ69YU3 496 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 HEPHL1Q6MZM0 1159 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 GGNQ86UU5 652 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 EXOC3L1Q86VI1 746 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 OR2L13Q8N349 312 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 CDYL2Q8N8U2 506 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 SSU72Q9NP77 194 aaKnown RBP11.67□□□□□ -0.54
HDAC6-227ENST00000485102 MKS1Q9NXB0 559 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 TBK1Q9UHD2 729 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 GPR52Q9Y2T5 361 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 EMC9Q9Y3B6 208 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 FREM1Q5H8C1 2179 aa11.67□□□□□ -0.54
HDAC6-227ENST00000485102 UQCRHLA0A096LP55 91 aa11.66□□□□□ -0.54
HDAC6-227ENST00000485102 C7orf72A4D263 438 aa11.66□□□□□ -0.54
HDAC6-227ENST00000485102 H3BML4 177 aa11.66□□□□□ -0.54
HDAC6-227ENST00000485102 OVOL3O00110 214 aa11.66□□□□□ -0.54
HDAC6-227ENST00000485102 UPK1AO00322 258 aa11.66□□□□□ -0.54
HDAC6-227ENST00000485102 COPEO14579 308 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms