RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NKX2-6A6NCS4 301 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 FOXO6A8MYZ6 492 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 AHRRA9YTQ3 701 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TO15178 435 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TRAPPC6AO75865 159 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 RSL1D1O76021 490 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TOXO94900 526 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 HPNP05981 417 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 ANXA4P09525 319 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 UROSP10746 265 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 DDCP20711 480 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MPIP34949 423 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 KRT20P35900 424 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 PPICP45877 212 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 ZFP36L2P47974 494 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TRPC1P48995 793 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 EMDP50402 254 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 CDK9P50750 372 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MRPS35P82673 323 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TOMM20Q15388 145 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 CEBPEQ15744 281 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 RIPPLY2Q5TAB7 128 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 LIPMQ5VYY2 423 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 RTL6Q6ICC9 239 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC30A6Q6NXT4 461 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM81Q6P7N7 255 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 SCIMPQ6UWF3 145 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MEX3BQ6ZN04 569 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 IKBIPQ70UQ0 350 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 NUP54Q7Z3B4 507 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 PM20D2Q8IYS1 436 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 ACBD4Q8NC06 268 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 OR1J4Q8NGS1 313 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 OR9A2Q8NGT5 310 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 CDC26Q8NHZ8 85 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM76AQ8TAV0 307 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 KAT2AQ92830 837 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 HGDQ93099 445 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TMCO6Q96DC7 493 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 DTNBP1Q96EV8 351 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 C11orf24Q96F05 449 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 C14orf79Q96F83 325 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 GNRHR2Q96P88 292 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 BTBD9Q96Q07 612 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TREX2Q9BQ50 279 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 OSBPL11Q9BXB4 747 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 UCK2Q9BZX2 261 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 IQCGQ9H095 443 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 ENKD1Q9H0I2 346 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 STMN4Q9H169 189 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 UBQLN3Q9H347 655 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 KCNJ16Q9NPI9 418 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MIEF1Q9NQG6 463 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 RRAGDQ9NQL2 400 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 OXSMQ9NWU1 459 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 KLRF1Q9NZS2 232 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 C15orf41Q9Y2V0 281 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 TESMINQ9Y4I5 508 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 MED12Q93074 2177 aa6.2□□□□□ -1.42
CCDC88A-213ENST00000476903 A0A0G2JNJ9 132 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TLDC2A0PJX2 215 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 PRAMEF25A6NGN4 478 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 OR6C70A6NIJ9 312 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 HSPB2A8KAH6 182 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC28A1O00337 649 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 RGS14O43566 566 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 PLOD3O60568 738 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ICOSLGO75144 302 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 COQ9O75208 318 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 UGT2B11O75310 529 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ERN1O75460 977 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 REM1O75628 298 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 IGFBP2P18065 325 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 PTPN6P29350 595 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 IL12BP29460 328 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 NTSP30990 170 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 GCKP35557 465 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 NCBP2P52298 156 aaKnown RBP eCLIP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC18A2Q05940 514 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TFF3Q07654 80 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 CRYZQ08257 329 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 C2orf80Q0P641 193 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 EFR3AQ14156 821 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SF3B4Q15427 424 aaKnown RBP eCLIP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 HSPB2Q16082 182 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC25A35Q3KQZ1 300 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 NHSL2Q5HYW2 709 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 FNDC7Q5VTL7 733 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TIGD3Q6B0B8 471 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 NOXRED1Q6NXP6 359 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ANGPTL8Q6UXH0 198 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 CD300LDQ6UXZ3 194 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 C10orf107Q8IVU9 208 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ULK2Q8IYT8 1036 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 CLYBLQ8N0X4 340 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 C4orf33Q8N1A6 199 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 RIBC1Q8N443 379 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SIMC1Q8NDZ2 872 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 OR7G2Q8NG99 324 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TMBIM1Q969X1 311 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms