RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PRAMEF25A6NGN4 478 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 B2RBV5 119 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 TP53I11O14683 189 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 SLC28A2O43868 658 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 KIAA0513O60268 411 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 OXSR1O95747 527 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 AK1P00568 194 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 NR2F1P10589 423 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 CD46P15529 392 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 CALB2P22676 271 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 EVI2BP34910 448 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 DCTP40126 519 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 RFC3P40938 356 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 GAS1P54826 345 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 PSMD4P55036 377 aaKnown RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 TXNL4AP83876 142 aaKnown RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 MAPK14Q16539 360 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 CYP51A1Q16850 503 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 FLYWCH1Q4VC44 716 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF605Q86T29 641 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 MARCH3Q86UD3 253 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 HPS6Q86YV9 775 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 POGLUT1Q8NBL1 392 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 C5orf34Q96MH7 638 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 TRNT1Q96Q11 434 aaKnown RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 HOPXQ9BPY8 73 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 G6PC3Q9BUM1 346 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 RSPO3Q9BXY4 272 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-209ENST00000469852 ANGPTL4Q9BY76 406 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 SAP130Q9H0E3 1048 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 SACM1LQ9NTJ5 587 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 WDR45Q9Y484 360 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 SCO2O43819 266 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 PEX1O43933 1283 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 STX11O75558 287 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 UGT2B17O75795 530 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 SOX30O94993 753 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 P04436 131 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 SFTPCP11686 197 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 ATP6V1C1P21283 382 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 MXRA7P84157 204 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 FNDC7Q5VTL7 733 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 AP1ARQ63HQ0 302 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TMEM81Q6P7N7 255 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 LRRC74BQ6ZQY2 392 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-209ENST00000469852 SERPINA11Q86U17 422 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 GATSQ8NAP1 163 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 OR2M7Q8NG81 312 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 PNPLA2Q96AD5 504 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TMCO6Q96DC7 493 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TAAR6Q96RI8 345 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 SECISBP2Q96T21 854 aaKnown RBP13.53□□□□□ -0.24
COL9A3-209ENST00000469852 ECSITQ9BQ95 431 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 OSBPL11Q9BXB4 747 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TMEM38AQ9H6F2 299 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 METTL7AQ9H8H3 244 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 RYDENQ9NUL5 291 aaKnown RBP13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TUBA8Q9NY65 449 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-209ENST00000469852 KLRF1Q9NZS2 232 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 CNIH4Q9P003 139 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 TMEM181Q9P2C4 612 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 ABCD2Q9UBJ2 740 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 LIPT1Q9Y234 373 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 PCDHGA10Q9Y5H3 936 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 DSPPQ9NZW4 1301 aa13.53□□□□□ -0.24
COL9A3-209ENST00000469852 C15orf38-AP3S2A0A0A6YYH1 394 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 LRRC3CA6NJW4 275 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 HS6ST1O60243 411 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 BCAS1O75363 584 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 GCM2O75603 506 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 SORBS2O94875 1100 aaKnown RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 CNR1P21554 472 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 TBXA2RP21731 343 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 GSK3BP49841 420 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 MEOX1P50221 254 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 ATP12AP54707 1039 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 HPCAP84074 193 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 CDK6Q00534 326 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PLAURQ03405 335 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 LIPEQ05469 1076 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 FOXO1Q12778 655 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 KLRB1Q12918 225 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 BNIP1Q12981 228 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 SCARB2Q14108 478 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 CD226Q15762 336 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PRR30Q53SZ7 412 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 RNFT1Q5M7Z0 435 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PDZK1Q5T2W1 519 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 ARPINQ7Z6K5 226 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 DEFB107AQ8IZN7 70 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 PGAM4Q8N0Y7 254 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 ZNF619Q8N2I2 560 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 RNF148Q8N7C7 305 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 TEX19Q8NA77 164 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 TMEM178AQ8NBL3 297 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 SLC7A6OSQ96CW6 309 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 SH3GL1Q99961 368 aa13.52□□□□□ -0.25
COL9A3-209ENST00000469852 TREX2Q9BQ50 279 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-209ENST00000469852 KLHDC3Q9BQ90 382 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms