RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ANGPTL1O95841 491 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 IGKV1D-16P01601 117 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 KLK2P20151 261 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 CPOXP36551 454 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 PPP2R2AP63151 447 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 RPL38P63173 70 aaKnown RBP14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 PDE7AQ13946 482 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 GRAMD1BQ3KR37 738 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 RFTN2Q52LD8 501 aaPredicted RBP14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 VWA1Q6PCB0 445 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 APOOLQ6UXV4 268 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 CNEP1R1Q8N9A8 125 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 CDRT4Q8N9R6 151 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 OR5M1Q8NGP8 315 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 GPR151Q8TDV0 419 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 SMPDL3BQ92485 455 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 FIG4Q92562 907 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 PIK3R3Q92569 461 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 TSSK3Q96PN8 268 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 PINK1Q9BXM7 581 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 ACSS1Q9NUB1 689 aaPredicted RBP14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 SH3BP4Q9P0V3 963 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 TMED5Q9Y3A6 229 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF175Q9Y473 711 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 TESMINQ9Y4I5 508 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 DNAJC15Q9Y5T4 150 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 ABCA4P78363 2273 aa14.94□□□□□ -0.02
CCDC28B-204ENST00000469003 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 H0YC42 278 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 CASKO14936 926 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 LSM1O15116 133 aaKnown RBP14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 SMNDC1O75940 238 aaKnown RBP eCLIP14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 LINC00032P0C843 101 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 KIR2DL2P43627 348 aaPredicted RBP14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 PRKAG1P54619 331 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 MANFP55145 182 aaKnown RBP14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 TPD52P55327 224 aaPredicted RBP14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 CLDN20P56880 219 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 OCRLQ01968 901 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 KEAP1Q14145 624 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 POU4F3Q15319 338 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 TMEM44Q2T9K0 475 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 DEFB113Q30KQ7 82 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 BTLAQ7Z6A9 289 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 METTL25Q8N6Q8 603 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 NUP43Q8NFH3 380 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 MTERF3Q96E29 417 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 GIMAP5Q96F15 307 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 PGM2Q96G03 612 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 APOPT1Q96IL0 206 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 MS4A4EQ96PG1 132 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 HHATLQ9HCP6 504 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 BAIAP2L1Q9UHR4 511 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 AP4B1Q9Y6B7 739 aa14.93□□□□□ -0.02
CCDC28B-204ENST00000469003 TLDC2A0PJX2 215 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 ALG1L2C9J202 215 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 EMC8O43402 210 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 NPHS1O60500 1241 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 NGFRP08138 427 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FGF4P08620 206 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 ACP2P11117 423 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 ALDH3A1P30838 453 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 CD79BP40259 229 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 ASMTP46597 345 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 RPS3AP61247 264 aaKnown RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FAM27E3Q08E93 113 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FOXD4Q12950 439 aaPredicted RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FGFBP1Q14512 234 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 EXOC3L1Q86VI1 746 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 RIBC1Q8N443 379 aaPredicted RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 OR6Y1Q8NGX8 325 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 CLHC1Q8NHS4 586 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FNDC9Q8TBE3 224 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 FAM110BQ8TC76 370 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 SLC9A6Q92581 669 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 TRIM44Q96DX7 344 aaPredicted RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF845Q96IR2 970 aaPredicted RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 L2HGDHQ9H9P8 463 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 RNF122Q9H9V4 155 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 EIF3LQ9Y262 564 aaKnown RBP14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 DNHD1Q96M86 4753 aa14.92□□□□□ -0.02
CCDC28B-204ENST00000469003 A0A1W2PPR1 153 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 NDUFB5O43674 189 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 OXSR1O95747 527 aaPredicted RBP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 CHRNGP07510 517 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 BCKDHAP12694 445 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF17P17021 662 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 DDX5P17844 614 aaKnown RBP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 TBXA2RP21731 343 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 LCN1P31025 176 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 SIRPAP78324 504 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 ADAM8P78325 824 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 PON3Q15166 354 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 UGT3A2Q3SY77 523 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 GALNTL6Q49A17 601 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 MFSD12Q6NUT3 480 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 ZCCHC12Q6PEW1 402 aa14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 ZNF474Q6S9Z5 364 aaPredicted RBP14.91□□□□□ -0.02
CCDC28B-204ENST00000469003 LRIG3Q6UXM1 1119 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms