RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR4A15Q8NGL6 344 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 SFXN5Q8TD22 340 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 HOXB13Q92826 284 aaPredicted RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 MOAP1Q96BY2 351 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 GIMAP5Q96F15 307 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 OR52E6Q96RD3 313 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 LMF2Q9BU23 707 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 ZNF385DQ9H6B1 395 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 SACM1LQ9NTJ5 587 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 TMEM45AQ9NWC5 275 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 FAM53CQ9NYF3 392 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 CRIM1Q9NZV1 1036 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 SNX8Q9Y5X2 465 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 NPFFR2Q9Y5X5 522 aa10.88□□□□□ -0.67
SQSTM1-206ENST00000466342 TTC36A6NLP5 189 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CAPN14A8MX76 684 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 ARHGEF9O43307 516 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CDC40O60508 579 aaKnown RBP eCLIP10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 NAGAP17050 411 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 NCF2P19878 526 aaPredicted RBP10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 ABCD3P28288 659 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 SOAT1P35610 550 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 PEX19P40855 299 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 MAP3K8P41279 467 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 PRIM2P49643 509 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 PRKAG1P54619 331 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 GNGT1P63211 74 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 PLGLB1Q02325 96 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 SF3A3Q12874 501 aaKnown RBP eCLIP10.87□□□□□ -0.674e-9■■■■□ 20.9
SQSTM1-206ENST00000466342 SNTB1Q13884 538 aaKnown RBP10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 RCAN2Q14206 197 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 ZNHIT3Q15649 155 aaPredicted RBP10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 NTRK2Q16620 822 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 HYAL4Q2M3T9 481 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 SPDYE7PQ495Y7 208 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC22A10Q63ZE4 541 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 MFSD12Q6NUT3 480 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 ZCCHC12Q6PEW1 402 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 BHLHB9Q6PI77 547 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 MSANTD1Q6ZTZ1 278 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 PRR22Q8IZ63 422 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CIARTQ8N365 385 aaPredicted RBP10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CDRT4Q8N9R6 151 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 OR56A1Q8NGH5 318 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 OR52N2Q8NGI0 321 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 OR10Q1Q8NGQ4 319 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 C10orf82Q8WW14 230 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 OMA1Q96E52 524 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CCDC115Q96NT0 180 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 DEFB127Q9H1M4 99 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 RABEP2Q9H5N1 569 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 ZDHHC11Q9H8X9 412 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 IL1RL2Q9HB29 575 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 SH2D2AQ9NP31 389 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 EQTNQ9NQ60 294 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 CCDC167Q9P0B6 97 aa10.87□□□□□ -0.67
SQSTM1-206ENST00000466342 RNF103-CHMP3A0A140T963 221 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PINLYPA6NC86 204 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PPM1BO75688 479 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PDE9AO76083 593 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 GLSO94925 669 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 CPSF4O95639 269 aaKnown RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 IGHG3P01860 377 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 HMGN2P05204 90 aaKnown RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 CCL3P10147 92 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 UQCRC2P22695 453 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 SEC24CP53992 1094 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PLCXD2Q0VAA5 305 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 TP53BP2Q13625 1128 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 LASP1Q14847 261 aaKnown RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 DAZAP2Q15038 168 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 VPS26BQ4G0F5 336 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 TIGD2Q4W5G0 525 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 EXOSC6Q5RKV6 272 aaKnown RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 BLOC1S3Q6QNY0 202 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 WDR53Q7Z5U6 358 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 FUNDC1Q8IVP5 155 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 SLC44A2Q8IWA5 706 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 OR10G3Q8NGC4 313 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 OR5M3Q8NGP4 307 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 OR5AK3PQ8NH89 298 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PAQR8Q8TEZ7 354 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 TMBIM1Q969X1 311 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 PANX1Q96RD7 426 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 TTTY12Q9BZ98 90 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 NSRP1Q9H0G5 558 aaKnown RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 RMND5AQ9H871 391 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 Q9N2J8 555 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 MRGBPQ9NV56 204 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 GPATCH2Q9NW75 528 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 BEX4Q9NWD9 120 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 CNIH4Q9P003 139 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 OR10H1Q9Y4A9 318 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 CHCHD2Q9Y6H1 151 aaPredicted RBP10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 NINQ8N4C6 2090 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 NCKAP5O14513 1909 aa10.86□□□□□ -0.67
SQSTM1-206ENST00000466342 GMNCA6NCL1 334 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 OR14I1A6ND48 311 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 CCDC154A6NI56 674 aa10.85□□□□□ -0.67
SQSTM1-206ENST00000466342 OR6C70A6NIJ9 312 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms