RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	NR0B1	P51843	470 aa	Known RBP	10.21	□□□□□ -0.77
APTX-209	ENST00000460940	STX1B	P61266	288 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	LRRC74A	Q0VAA2	488 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	TRIM16L	Q309B1	348 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	PGS1	Q32NB8	556 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	SLC25A25	Q6KCM7	469 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	ZNF227	Q86WZ6	799 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	SLC7A5P1	Q8MH63	180 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	LILRA2	Q8N149	483 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	MIER2	Q8N344	545 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	FAM98A	Q8NCA5	519 aa	Known RBP	10.21	□□□□□ -0.77
APTX-209	ENST00000460940	MOAP1	Q96BY2	351 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	NXF5	Q9H1B4	397 aa	Known RBP	10.21	□□□□□ -0.77
APTX-209	ENST00000460940	FOLH1B	Q9HBA9	442 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	FAM120C	Q9NX05	1096 aa	Known RBP	10.21	□□□□□ -0.77
APTX-209	ENST00000460940	DTX4	Q9Y2E6	619 aa		10.21	□□□□□ -0.77
APTX-209	ENST00000460940	GPR55	Q9Y2T6	319 aa	Predicted RBP	10.21	□□□□□ -0.77
APTX-209	ENST00000460940	ANKRD34B	A5PLL1	514 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940		H3BMQ9	156 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	EMC8	O43402	210 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SLC28A2	O43868	658 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	ERN1	O75460	977 aa	Known RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SLC22A3	O75751	556 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	ATE1	O95260	518 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	S100A3	P33764	101 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	UFM1	P61960	85 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	RPP38	P78345	283 aa	Known RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	FLOT2	Q14254	428 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	ZNHIT3	Q15649	155 aa	Predicted RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	NTRK2	Q16620	822 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	ZNF791	Q3KP31	576 aa	Predicted RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	FAM174B	Q3ZCQ3	159 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	VPS26B	Q4G0F5	336 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	TMEM198	Q66K66	360 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	LYPD8	Q6UX82	237 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	IL20RB	Q6UXL0	311 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	PSD4	Q8NDX1	1056 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SIMC1	Q8NDZ2	872 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	OR56A1	Q8NGH5	318 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SFXN5	Q8TD22	340 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	COG8	Q96MW5	612 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SECISBP2	Q96T21	854 aa	Known RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	PKP2	Q99959	881 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	MOV10	Q9HCE1	1003 aa	Known RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	SIRT3	Q9NTG7	399 aa	Predicted RBP	10.21	□□□□□ -0.78
APTX-209	ENST00000460940	TMEM45A	Q9NWC5	275 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	LUZP4	Q9P127	313 aa		10.21	□□□□□ -0.78
APTX-209	ENST00000460940	PRRC2C	Q9Y520	2896 aa	Known RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	TP53I11	O14683	189 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ZNF354A	O60765	605 aa	Predicted RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	RASAL1	O95294	804 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	C6orf47	O95873	294 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	IL6	P05231	212 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	FOSL1	P15407	271 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ENPP1	P22413	925 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ABCD3	P28288	659 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ATP4B	P51164	291 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	BMX	P51813	675 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	NME5	P56597	212 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	MRPS22	P82650	360 aa	Known RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	PLCXD2	Q0VAA5	305 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	INPP5J	Q15735	1006 aa	Predicted RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	MAPKAPK3	Q16644	382 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	SPANXN4	Q5MJ08	99 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	OR4F3	Q6IEY1	312 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	KRT80	Q6KB66	452 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ZCCHC12	Q6PEW1	402 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	BHLHB9	Q6PI77	547 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	FAM180A	Q6UWF9	173 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	MSANTD1	Q6ZTZ1	278 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ZNF605	Q86T29	641 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	SLC34A3	Q8N130	599 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	GALNT4	Q8N4A0	578 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	CPSF7	Q8N684	471 aa	Known RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	POGLUT1	Q8NBL1	392 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	DNAJB8	Q8NHS0	232 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	CPT1C	Q8TCG5	803 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	MARK4	Q96L34	752 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	DCUN1D5	Q9BTE7	237 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	LMF2	Q9BU23	707 aa	Known RBP	10.2	□□□□□ -0.78
APTX-209	ENST00000460940	ANKRA2	Q9H9E1	313 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	SH2D2A	Q9NP31	389 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	AGPAT4	Q9NRZ5	378 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	NPFFR2	Q9Y5X5	522 aa		10.2	□□□□□ -0.78
APTX-209	ENST00000460940	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.19	□□□□□ -0.78
APTX-209	ENST00000460940	ASPDH	A6ND91	283 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	KLRC4-KLRK1	H3BQV0	150 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	SLC22A2	O15244	555 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	SLC22A1	O15245	554 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	CFLAR	O15519	480 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	ABCB7	O75027	752 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	PPM1B	O75688	479 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	CRYAB	P02511	175 aa	Known RBP	10.19	□□□□□ -0.78
APTX-209	ENST00000460940	PGR	P06401	933 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	CT45A8	P0DMV1	189 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	CT45A9	P0DMV2	189 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	EFNA1	P20827	205 aa	Predicted RBP	10.19	□□□□□ -0.78
APTX-209	ENST00000460940	PRIM2	P49643	509 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	WNT3	P56703	355 aa		10.19	□□□□□ -0.78
APTX-209	ENST00000460940	TLE1	Q04724	770 aa		10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms