RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ABCD2Q9UBJ2 740 aa16.48■□□□□ 0.23
SQSTM1-204ENST00000453046 NUP214P35658 2090 aaPredicted RBP16.48■□□□□ 0.23
SQSTM1-204ENST00000453046 ADGRG4Q8IZF6 3080 aa16.48■□□□□ 0.23
SQSTM1-204ENST00000453046 GSC2O15499 205 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 TRAPPC6AO75865 159 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 SNX4O95219 450 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 ATP1B1P05026 303 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 GABRA1P14867 456 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 DMTNQ08495 405 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 MAP4K2Q12851 820 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 EXOSC7Q15024 291 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 CEBPEQ15744 281 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 NNATQ16517 81 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 C1orf185Q5T7R7 199 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 BICRALQ6AI39 1079 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 FAM180BQ6P0A1 224 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 PACS2Q86VP3 889 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 CLECL1Q8IZS7 167 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 C17orf47Q8NEP4 570 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 ADCY4Q8NFM4 1077 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 OR8J3Q8NGG0 315 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 GOT1L1Q8NHS2 421 aaPredicted RBP16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 NEIL3Q8TAT5 605 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 SPPL2AQ8TCT8 520 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 OR5P2Q8WZ92 322 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 PAIP1Q9H074 479 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 SLC6A15Q9H2J7 730 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 MAT2BQ9NZL9 334 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 SPRR3Q9UBC9 169 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 DTX4Q9Y2E6 619 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 FAM215AQ9Y5M1 114 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 NINQ8N4C6 2090 aa16.47■□□□□ 0.23
SQSTM1-204ENST00000453046 FBN2P35556 2912 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 A0A1W2PRB8 838 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 FAM47E-STBD1D6RA91 191 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 TRIM3O75382 744 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 C6orf47O95873 294 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 HOXD4P09016 255 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ZCCHC18P0CG32 403 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 GLI4P10075 376 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 NQO1P15559 274 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ENDOUP21128 410 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 S1PR1P21453 382 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ELAVL4P26378 380 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ABCD3P28288 659 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 PTPN6P29350 595 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 PGM1P36871 562 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 PRSS53Q2L4Q9 553 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 SPATS1Q496A3 300 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 OR52R1Q8NGF1 315 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 OR4A15Q8NGL6 344 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 C14orf79Q96F83 325 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 SLC39A3Q9BRY0 314 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 INPP5KQ9BT40 448 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 THTPAQ9BU02 230 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ITPAQ9BY32 194 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 ANGPTL4Q9BY76 406 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 NXF5Q9H1B4 397 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 VAPAQ9P0L0 249 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 SLAMF8Q9P0V8 285 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 PCDHGB4Q9UN71 923 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 AP3M1Q9Y2T2 418 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 GMEB1Q9Y692 573 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 DCHS2Q6V1P9 2916 aa16.46■□□□□ 0.23
SQSTM1-204ENST00000453046 MYO1GB0I1T2 1018 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 DNAJA2O60884 412 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TOXO94900 526 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 ANP32DO95626 131 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC6A2P23975 617 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 CASP3P42574 277 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 CDKN2CP42773 168 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC7A2P52569 658 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TLE4Q04727 773 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 PLCXD2Q0VAA5 305 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 MGAT2Q10469 447 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 DUSP8Q13202 625 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 CAPRIN1Q14444 709 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TOMM20Q15388 145 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 LTB4RQ15722 352 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TRMT12Q53H54 448 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 RTL6Q6ICC9 239 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TRIML2Q8N7C3 387 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 HSPBAP1Q96EW2 488 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 CNRIP1Q96F85 164 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 LCORQ96JN0 433 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 ANKRD27Q96NW4 1050 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 BBS4Q96RK4 519 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 SH3GL1Q99961 368 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 METTL7AQ9H8H3 244 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TAS2R9Q9NYW1 312 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC25A37Q9NYZ2 338 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 TMEM181Q9P2C4 612 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 PRODH2Q9UF12 536 aa16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 PHF3Q92576 2039 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-204ENST00000453046 GNB5O14775 395 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 PPM1BO75688 479 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 CPSF4O95639 269 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 ABCB1P08183 1280 aaPredicted RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 NAGAP17050 411 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms