RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 OR2T12Q8NG77 320 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 OR10G3Q8NGC4 313 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 C9orf43Q8TAL5 461 aaPredicted RBP10.63□□□□□ -0.71
SCN9A-204ENST00000452182 SPPL2AQ8TCT8 520 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 NTNG2Q96CW9 530 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 TMEM19Q96HH6 336 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 SIGLEC12Q96PQ1 595 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 CDRT15Q96T59 188 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 TREX2Q9BQ50 279 aaPredicted RBP10.63□□□□□ -0.71
SCN9A-204ENST00000452182 KRTAP3-3Q9BYR6 98 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 KRTAP3-2Q9BYR7 98 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 SLC38A1Q9H2H9 487 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 RUBCNLQ9H714 662 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 MTHFD2LQ9H903 347 aaPredicted RBP10.63□□□□□ -0.71
SCN9A-204ENST00000452182 TIMMDC1Q9NPL8 285 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 PRPF19Q9UMS4 504 aaKnown RBP10.63□□□□□ -0.71
SCN9A-204ENST00000452182 WDR45Q9Y484 360 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 CACNA1GO43497 2377 aa10.63□□□□□ -0.71
SCN9A-204ENST00000452182 TRAV17A0A0B4J275 112 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ELOVL7A1L3X0 281 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 PRORSD1PA6NEY8 169 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 POM121CA8CG34 1229 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 C5orf58C9J3I9 102 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 K7EM74 188 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 GYG2O15488 501 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SLC25A12O75746 678 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 PGM3O95394 542 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 UTS2O95399 124 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ZIC2O95409 532 aaPredicted RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ETS2P15036 469 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 RFX3P48380 749 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 GSK3BP49841 420 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ATP12AP54707 1039 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 PCBP3P57721 371 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CHRNEQ04844 493 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ZNF141Q15928 474 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 FXNQ16595 210 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 FLYWCH1Q4VC44 716 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SPINK14Q6IE38 97 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 Q6ZS92 163 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ASB18Q6ZVZ8 466 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 MDGA2Q7Z553 956 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 YTHDF3Q7Z739 585 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ZAR1Q86SH2 424 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ZNF619Q8N2I2 560 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 PSD4Q8NDX1 1056 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 TNIP2Q8NFZ5 429 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 OR4C3Q8NH37 302 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 BBS10Q8TAM1 723 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SCMH1Q96GD3 660 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 NODALQ96S42 347 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ADA2Q9NZK5 511 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SUCOQ9UBS9 1254 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CD300AQ9UGN4 299 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CNOT11Q9UKZ1 510 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 MKLN1Q9UL63 735 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 TP53TG5Q9Y2B4 290 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 NBEAQ8NFP9 2946 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 A0A1W2PQD3 144 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ALG1L2C9J202 215 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 FADS1O60427 444 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ICOSLGO75144 302 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 F10P00742 488 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SP1P08047 785 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CCL3P10147 92 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 RPS4Y1P22090 263 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 HTR1EP28566 365 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 EVI2BP34910 448 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 DCTP40126 519 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CASP3P42574 277 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CD97P48960 835 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ST13P50502 369 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 GRAMD1BQ3KR37 738 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 LACTB2Q53H82 288 aaPredicted RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 KLHL26Q53HC5 615 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 INTS11Q5TA45 600 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SLC25A25Q6KCM7 469 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SLC30A6Q6NXT4 461 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 THSD4Q6ZMP0 1018 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 GALNT10Q86SR1 603 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 MICU2Q8IYU8 434 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 RBMXL3Q8N7X1 1067 aaKnown RBP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 EXD3Q8N9H8 876 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ZNF527Q8NB42 609 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CATSPER1Q8NEC5 780 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 OR5M3Q8NGP4 307 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 NFKBIDQ8NI38 313 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 FRMD6Q96NE9 622 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ANGPTL4Q9BY76 406 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.62□□□□□ -0.71
SCN9A-204ENST00000452182 HHATLQ9HCP6 504 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 SACM1LQ9NTJ5 587 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 ANGPT4Q9Y264 503 aa10.62□□□□□ -0.71
SCN9A-204ENST00000452182 BSNQ9UPA5 3926 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 PRAMEF25A6NGN4 478 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 AGAP5A6NIR3 686 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 SCDO00767 359 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 NME2P1O60361 137 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 UGT2B17O75795 530 aa10.61□□□□□ -0.71
SCN9A-204ENST00000452182 SNX4O95219 450 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms