RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TXN2Q99757 166 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 TMEM109Q9BVC6 243 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 TPPP3Q9BW30 176 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 NMNAT2Q9BZQ4 307 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ROPN1BQ9BZX4 212 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 NSRP1Q9H0G5 558 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 TFB2MQ9H5Q4 396 aaKnown RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 EVA1AQ9H8M9 152 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 ROPN1Q9HAT0 212 aaPredicted RBP3.64□□□□□ -1.83
VPS29-202ENST00000447578 SCRT2Q9NQ03 307 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 HPS4Q9NQG7 708 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 CENPMQ9NSP4 180 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 RNF186Q9NXI6 227 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 PLEK2Q9NYT0 353 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 FLRT3Q9NZU0 649 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 IL20RAQ9UHF4 553 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 LAMP5Q9UJQ1 280 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 GGA2Q9UJY4 613 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 FBXL4Q9UKA2 621 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 PILRBQ9UKJ0 227 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 PILRAQ9UKJ1 303 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 POMT2Q9UKY4 750 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 MGAT4BQ9UQ53 548 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 PHIPQ8WWQ0 1821 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 DOCK1Q14185 1865 aa3.64□□□□□ -1.83
VPS29-202ENST00000447578 hCG_1818297A0A087WSY0 165 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 IGKV6-21A0A0C4DH24 114 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 A0A1B0GWJ7 208 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ATP6AP2A0A1C7CYW4 349 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TMEM120BA0PK00 339 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TMEM89A2RUT3 159 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ERI2A8K979 691 aaKnown RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 TCP11X1B4DZS4 312 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 GPR89AB7ZAQ6 455 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SGK1O00141 431 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 CXCL11O14625 94 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 DNALI1O14645 258 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 ANGPT2O15123 496 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 MLNRO43193 412 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 PRKNO60260 465 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 FAM189A1O60320 539 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SYNGR4O95473 234 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SERPINF2P08697 491 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 HIST1H2AGP0C0S8 130 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 GPR89BP0CG08 455 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TPBGLP0DKB5 382 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 IGHV4-38-2P0DP08 117 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 CXCL8P10145 99 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 PRKAR1AP10644 381 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 PRG2P13727 222 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 IVDP26440 423 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 CDH5P33151 784 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 SOX6P35712 828 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TAF6P49848 677 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 LBX1P52954 281 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 GEMP55040 296 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 DYNLT1P63172 113 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 OVGP1Q12889 678 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SGCGQ13326 291 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ITIH4Q14624 930 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TMED2Q15363 201 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 LRRC37A5PQ49AS3 106 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 PTPN20Q4JDL3 420 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 GPAT3Q53EU6 434 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 XKR6Q5GH73 641 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TNFAIP8L3Q5GJ75 292 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 IL23RQ5VWK5 629 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TMEM64Q6YI46 380 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 CDHR3Q6ZTQ4 885 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ARMCX2Q7L311 632 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 BNIPLQ7Z465 357 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TMEM110Q86TL2 294 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ISCA2Q86U28 154 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ERO1BQ86YB8 467 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ZNF573Q86YE8 665 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 FAM89BQ8N5H3 189 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ALLCQ8N6M5 410 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 MAB21L3Q8N8X9 362 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SLC37A3Q8NCC5 494 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 GPRC5AQ8NFJ5 357 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 OR13C5Q8NGS8 318 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 JOSD2Q8TAC2 188 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SECTM1Q8WVN6 248 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 HIST1H2ACQ93077 130 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 OPTNQ96CV9 577 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 RAB39BQ96DA2 213 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 MRPL53Q96EL3 112 aaKnown RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 ZNF317Q96PQ6 595 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 IL12RB2Q99665 862 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 LPAR4Q99677 370 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 JPH2Q9BR39 696 aaPredicted RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 CCDC77Q9BR77 488 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 FUNDC2Q9BWH2 189 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 EGLN1Q9GZT9 426 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 LHX5Q9H2C1 402 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 SMYD3Q9H7B4 428 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 ZNF665Q9H7R5 613 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 VPS37BQ9H9H4 285 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 YAE1D1Q9NRH1 226 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms