RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 ZFYVE21Q9BQ24 234 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 KLHDC3Q9BQ90 382 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 PCDHGB1Q9Y5G3 927 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CELP19835 753 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 OR1D4P47884 311 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 EIF2B5Q13144 721 aaKnown RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ZNF267Q14586 743 aaPredicted RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 TBCEQ15813 527 aaPredicted RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 TMEM35AQ53FP2 167 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 PDZK1Q5T2W1 519 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 SYT9Q86SS6 491 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CADM3Q8N126 398 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 OR13C2Q8NGS9 318 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CNOT9Q92600 299 aaKnown RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ORAI1Q96D31 301 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ACTRT3Q9BYD9 372 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 FN3KQ9H479 309 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ISG20L2Q9H9L3 353 aaKnown RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 OSGIN1Q9UJX0 560 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 HSPE1-MOB4S4R3N1 261 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 BOD1L1Q8NFC6 3051 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 RFPL3O75679 317 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CSF2P04141 144 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 IFI30P13284 250 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 HTR2AP28223 471 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 AKT2P31751 481 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 EIF2DP41214 584 aaKnown RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 TNFRSF17Q02223 184 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ILKQ13418 452 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 SUZ12Q15022 739 aaKnown RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CRTC2Q53ET0 693 aaPredicted RBP11.11□□□□□ -0.63
PTPRN-204ENST00000423636 ZNF554Q86TJ5 538 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 LRRC17Q8N6Y2 441 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 CELF2-AS1Q8N7Q2 184 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 TMEM80Q96HE8 168 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 SDF2Q99470 211 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 NECTIN3Q9NQS3 549 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 MGAT4BQ9UQ53 548 aa11.11□□□□□ -0.63
PTPRN-204ENST00000423636 MAP1BP46821 2468 aaKnown RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TGFBR3LH3BV60 316 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 CCRL2O00421 344 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 NOS3P29474 1203 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 EIF2B2P49770 351 aaKnown RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 BCAP31P51572 246 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 IL20RBQ6UXL0 311 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 GLCCI1Q86VQ1 547 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 CROCCP3Q8IVE0 287 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 ZNF321PQ8N8H1 164 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TTLQ8NG68 377 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 EFHD2Q96C19 240 aaPredicted RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 FOXN4Q96NZ1 517 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 COMMD3Q9UBI1 195 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 DHCR7Q9UBM7 475 aaKnown RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TMEM184BQ9Y519 407 aaPredicted RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TRIM64BA6NI03 449 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TTC36A6NLP5 189 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 TSPAN19P0C672 248 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 MAKP20794 623 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 S100A5P33763 92 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 SDC2P34741 201 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 EMDP50402 254 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 HNRNPA0Q13151 305 aaKnown RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 IRF3Q14653 427 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 THSD4Q6ZMP0 1018 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 ATCAYQ86WG3 371 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 ANKK1Q8NFD2 765 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 PRRC1Q96M27 445 aa11.1□□□□□ -0.63
PTPRN-204ENST00000423636 ZNF443Q9Y2A4 671 aaPredicted RBP11.1□□□□□ -0.63
PTPRN-204ENST00000423636 METTL15A6NJ78 407 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 TNFP01375 233 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 TLX1P31314 330 aaPredicted RBP11.09□□□□□ -0.63
PTPRN-204ENST00000423636 GCGRP47871 477 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 CSNK1EP49674 416 aaKnown RBP11.09□□□□□ -0.63
PTPRN-204ENST00000423636 RPS15AP62244 130 aaKnown RBP11.09□□□□□ -0.63
PTPRN-204ENST00000423636 MINDY4Q4G0A6 757 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 OR56A1Q8NGH5 318 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 ZDHHC1Q8WTX9 485 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 GAL3ST3Q96A11 431 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 MMABQ96EY8 250 aaPredicted RBP11.09□□□□□ -0.63
PTPRN-204ENST00000423636 NEDD4LQ96PU5 975 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 BEX2Q9BXY8 128 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 UCKL1Q9NWZ5 548 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 FLRT3Q9NZU0 649 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 MUTYHQ9UIF7 546 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 KNTC1P50748 2209 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 SHISA7A6NL88 538 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 CHST10O43529 356 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 TBXA2RP21731 343 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 CSTF2P33240 577 aaKnown RBP eCLIP11.09□□□□□ -0.63
PTPRN-204ENST00000423636 MAGEB1P43366 347 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 CDH11P55287 796 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 RELAQ04206 551 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 FZD2Q14332 565 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 DCST2Q5T1A1 773 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 C1orf189Q5VU69 101 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 FAM69BQ5VUD6 431 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 SLX4IPQ5VYV7 408 aa11.09□□□□□ -0.63
PTPRN-204ENST00000423636 ARMC6Q6NXE6 501 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms