RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 PAFAH1B3Q15102 231 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 STXBP2Q15833 593 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NRF1Q16656 503 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 FAM83EQ2M2I3 478 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 VWC2Q2TAL6 325 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 RFX4Q33E94 735 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 HSDL1Q3SXM5 330 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 PHLDA2Q53GA4 152 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 KLHL26Q53HC5 615 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ZNF628Q5EBL2 1059 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 PPM1LQ5SGD2 360 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ATF7IP2Q5U623 682 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 GFI1BQ5VTD9 330 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 AGAP7PQ5VUJ5 663 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SLX4IPQ5VYV7 408 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CST9LP1Q5W188 147 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TTC23Q5W5X9 447 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ARHGAP17Q68EM7 881 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NCBP2-AS2Q69YL0 99 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SNRNP48Q6IEG0 339 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 PRR27Q6MZM9 219 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ANKRD26P1Q6NSI1 321 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MFSD12Q6NUT3 480 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NEPROQ6NW34 567 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SCYL2Q6P3W7 929 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SCARA5Q6ZMJ2 495 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 RBPMS2Q6ZRY4 209 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 FAM183BPQ6ZVS7 135 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 DET1Q7L5Y6 550 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 EFL1Q7Z2Z2 1120 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 TMPRSS11BQ86T26 416 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 KCNMB4Q86W47 210 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 UNC93AQ86WB7 457 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NUDT13Q86X67 352 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 LACC1Q8IV20 430 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CCDC60Q8IWA6 550 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 CNTN4Q8IWV2 1026 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 KLHDC8BQ8IXV7 354 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TBC1D21Q8IYX1 336 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CDK20Q8IZL9 346 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 PARP8Q8N3A8 854 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CHCHD4Q8N4Q1 142 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 DHRSXQ8N5I4 330 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ATP6V0D2Q8N8Y2 350 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ZNF383Q8NA42 475 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NPEPL1Q8NDH3 523 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TRPV3Q8NET8 790 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 OR6J1Q8NGC5 347 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 URGCPQ8TCY9 931 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MAPK15Q8TD08 544 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ACER1Q8TDN7 264 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ARNTL2Q8WYA1 636 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NR4A3Q92570 626 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TMIGD2Q96BF3 282 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TAMM41Q96BW9 452 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MOB3AQ96BX8 217 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 AURKBQ96GD4 344 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 VPS39Q96JC1 886 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 LINC00615Q96LM1 132 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 CSPG4P5Q96PW8 444 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TAAR1Q96RJ0 339 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CIB1Q99828 191 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MRPL57Q9BQC6 102 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 OSBPL10Q9BXB5 764 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MROQ9BYG7 248 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NFKBIZQ9BYH8 718 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SHCBP1LQ9BZQ2 653 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 LAT2Q9GZY6 243 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 EHD1Q9H4M9 534 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 DHX35Q9H5Z1 703 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 SP140LQ9H930 580 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 RPF1Q9H9Y2 349 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 UGT1A7Q9HAW7 530 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 UGT1A10Q9HAW8 530 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 UGT1A8Q9HAW9 530 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TMEM165Q9HC07 324 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 RAVER2Q9HCJ3 691 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 Q9N2K0 584 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 MYNNQ9NPC7 610 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 HPS4Q9NQG7 708 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 INIPQ9NRY2 104 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 GKN1Q9NS71 199 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ZNF701Q9NV72 531 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 TBC1D13Q9NVG8 400 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 DUS2Q9NX74 493 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 SMPD3Q9NY59 655 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 SPHK1Q9NYA1 384 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 FLRT3Q9NZU0 649 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 NFKBIL1Q9UBC1 381 aaPredicted RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 ABCD2Q9UBJ2 740 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CACNG4Q9UBN1 327 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SUN2Q9UH99 717 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 CYTH4Q9UIA0 394 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 ZNF639Q9UID6 485 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 DAPK2Q9UIK4 370 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 AP3M1Q9Y2T2 418 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 TDRKHQ9Y2W6 561 aaKnown RBP2.39□□□□□ -2.03
VPS41-206ENST00000418457 ACOT9Q9Y305 439 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 IFT52Q9Y366 437 aa2.39□□□□□ -2.03
VPS41-206ENST00000418457 SNX5Q9Y5X3 404 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms