RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MAN2A2P49641 1150 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 SMSP52788 366 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PRKAG1P54619 331 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 ZNF45Q02386 682 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PRKCDQ05655 676 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PIN1Q13526 163 aaPredicted RBP13.81□□□□□ -0.2
USP4-203ENST00000415188 TCEA2Q15560 299 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 ZNF181Q2M3W8 571 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PRRT3Q5FWE3 981 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CDCP2Q5VXM1 449 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 C18orf63Q68DL7 685 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 GUSBP11Q6P575 273 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 ENPP7Q6UWV6 458 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 VN1R4Q7Z5H5 301 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 MRGPREQ86SM8 312 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 NLGN4XQ8N0W4 816 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CACTIN-AS1Q8N1I8 211 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 MORN4Q8NDC4 146 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 OR6T1Q8NGN1 323 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 MS4A4EQ96PG1 132 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 LRRC61Q9BV99 259 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 SLC38A1Q9H2H9 487 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CACYBPQ9HB71 228 aaKnown RBP13.81□□□□□ -0.2
USP4-203ENST00000415188 KLHL28Q9NXS3 571 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 LSM2Q9Y333 95 aaKnown RBP13.81□□□□□ -0.2
USP4-203ENST00000415188 UGT2A1Q9Y4X1 527 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CSNK1G3Q9Y6M4 447 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CPED1A4D0V7 1026 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 AGAP5A6NIR3 686 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 SOX14O95416 240 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 SMIM10L1P0DMW3 83 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 DBTP11182 482 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 MMP11P24347 488 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ITPKBP27987 946 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 DUSP3P51452 185 aaPredicted RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 RAB8AP61006 207 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 YPEL5P62699 121 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 BTN3A2P78410 334 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CDK5Q00535 292 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ZNF91Q05481 1191 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 DUSP2Q05923 314 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 C1DQ13901 141 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 MED22Q15528 200 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TSTQ16762 297 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 TMEM44Q2T9K0 475 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 FAM214AQ32MH5 1076 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ZNF311Q5JNZ3 666 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 HEPHL1Q6MZM0 1159 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CDC73Q6P1J9 531 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 C16orf62Q7Z3J2 963 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ZER1Q7Z7L7 766 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ATCAYQ86WG3 371 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 FAM20CQ8IXL6 584 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 LRRC25Q8N386 305 aaPredicted RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 PROKR2Q8NFJ6 384 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 OR4E2Q8NGC2 313 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 OR9Q1Q8NGQ5 310 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 RSC1A1Q92681 617 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ITPKCQ96DU7 683 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TM4SF19Q96DZ7 209 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 SMIM10Q96HG1 83 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 C10orf90Q96M02 699 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 IL4I1Q96RQ9 567 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TSSK6Q9BXA6 273 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 POLR2J2Q9GZM3 115 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 OR51E2Q9H255 320 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 MRPS18AQ9NVS2 196 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 TRNAU1APQ9NX07 287 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 SEC14L4Q9UDX3 406 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 LOC100506127A0A0U1RQW1 187 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 PNMA8CA0A1B0GUJ8 204 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 A6NCN8 305 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 GP1BAP07359 652 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 HSMCR30P0CW71 290 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TLX1P31314 330 aaPredicted RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 GRK5P34947 590 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 FEN1P39748 380 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 EIF2S3P41091 472 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 ETV6P41212 452 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 MC3RP41968 323 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CD97P48960 835 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TAS2R41P59536 307 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 ST3GAL3Q11203 375 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TSPAN31Q12999 210 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 KLHL22Q53GT1 634 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 COMTD1Q86VU5 262 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CAMKVQ8NCB2 501 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 OR9A2Q8NGT5 310 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 TEX47Q8TBZ9 253 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 SNRNP27Q8WVK2 155 aaKnown RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 TSACCQ96A04 125 aaPredicted RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 OPALINQ96PE5 141 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 OR5M11Q96RB7 305 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 MACROD1Q9BQ69 325 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 WFDC6Q9BQY6 131 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CHCHD6Q9BRQ6 235 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 DNAJC27Q9NZQ0 273 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 PTGFRNQ9P2B2 879 aa13.8□□□□□ -0.2
USP4-203ENST00000415188 CRNNQ9UBG3 495 aaPredicted RBP13.8□□□□□ -0.2
USP4-203ENST00000415188 DIMT1Q9UNQ2 313 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms