RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RHPN2P1A8MT19 583 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FAAHO00519 579 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SOX30O94993 753 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 HMGN2P05204 90 aaKnown RBP11.23□□□□□ -0.61
HMGB1-206ENST00000405805 CD3GP09693 182 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 DDOSTP39656 456 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 VIPR2P41587 438 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 AKR1C2P52895 323 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 TNFRSF17Q02223 184 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 AKR1C1Q04828 323 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 RGS1Q08116 209 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 PIP5KL1Q5T9C9 394 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SFRP4Q6FHJ7 346 aaPredicted RBP11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ACSM5Q6NUN0 579 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 C3P1Q6ZMU1 363 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FBXL6Q8N531 539 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 OR5T3Q8NGG3 340 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 RFKQ969G6 155 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SLC6A17Q9H1V8 727 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 RPS6KB2Q9UBS0 482 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 OR52A4PA6NMU1 304 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FURINP09958 794 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ZDHHC11BP0C7U3 371 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 NPPBP16860 134 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF30P17039 623 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 GRPRP30550 384 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 TAP2Q03519 686 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 NNATQ16517 81 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ETFRF1Q6IPR1 90 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SLC39A5Q6ZMH5 540 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF783Q6ZMS7 281 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 OR4E2Q8NGC2 313 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 TRMT10AQ8TBZ6 339 aaKnown RBP11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SNX33Q8WV41 574 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 DPH7Q9BTV6 452 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.23□□□□□ -0.612e-6■□□□□ 10.8
HMGB1-206ENST00000405805 MGAT4CQ9UBM8 478 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FAM186AA6NE01 2351 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 WDR90Q96KV7 1748 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 CD63P08962 238 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 NAA10P41227 235 aaPredicted RBP11.23□□□□□ -0.61
HMGB1-206ENST00000405805 HAAOP46952 286 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 KCNJ5P48544 419 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 METAP1P53582 386 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 WNT4P56705 351 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 SEC23BQ15437 767 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 TCTN1Q2MV58 587 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF805Q5CZA5 627 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FAM76BQ5HYJ3 339 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 FAHD1Q6P587 224 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 PRSS42Q7Z5A4 293 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 OR6M1Q8NGM8 313 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF566Q969W8 418 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 DPP7Q9UHL4 492 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 NTNG1Q9Y2I2 539 aa11.23□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3DA0A087WVF3 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3IA0A087WXS9 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3EA0A087X179 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3KA0A087X1G2 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3FA6NER0 549 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3LB9A6J9 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 C1orf105O95561 183 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 NTN1O95631 604 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3HP0C7X1 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TIMP2P16035 220 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SOX18P35713 384 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ETV5P41161 510 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 PRR5P85299 388 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 RAB33AQ14088 237 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 NTRK2Q16620 822 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 CCNJQ5T5M9 372 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 PRPF38BQ5VTL8 546 aaKnown RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3GQ6DHY5 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3CQ6IPX1 549 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 PAPD4Q6PIY7 484 aaKnown RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ZC3H14Q6PJT7 736 aaKnown RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 FAM198BQ6UWH4 519 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 ABI3BPQ7Z7G0 1075 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 NLRP8Q86W28 1048 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TBC1D3Q8IZP1 549 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TRAM1L1Q8N609 369 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OR6T1Q8NGN1 323 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OR5P2Q8WZ92 322 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 CCDC3Q9BQI4 270 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM185BQ9H7F4 350 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 DDX31Q9H8H2 851 aaKnown RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SPHK2Q9NRA0 654 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 OR6C2Q9NZP2 312 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 GLS2Q9UI32 602 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 KLK4Q9Y5K2 254 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SPAG17Q6Q759 2223 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 FAM86C2PA6NEL3 165 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 PRNPP04156 253 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 PEPDP12955 493 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 HPGDP15428 266 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 CSNK2A2P19784 350 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-206ENST00000405805 SLC6A12P48065 614 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 HYAL2Q12891 473 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 FCN2Q15485 313 aa11.22□□□□□ -0.61
HMGB1-206ENST00000405805 C9orf152Q5JTZ5 239 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms