RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 APOBEC4Q8WW27 367 aaKnown RBP16.62■□□□□ 0.25
SDC1-203ENST00000403076 TAMM41Q96BW9 452 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 RYDENQ9NUL5 291 aaKnown RBP16.62■□□□□ 0.25
SDC1-203ENST00000403076 PCDHGA10Q9Y5H3 936 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 DOCK10Q96BY6 2186 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 DSPPQ9NZW4 1301 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 TMEM8BA6NDV4 472 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 AGAP5A6NIR3 686 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 TAF4O00268 1085 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 UGT2B17O75795 530 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 MFN2O95140 757 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 DBIP07108 87 aaKnown RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 CASRP41180 1078 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 OC90Q02509 493 aaPredicted RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 DMTNQ08495 405 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 KPNB1Q14974 876 aaKnown RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 PDZK1Q5T2W1 519 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 ISLR2Q6UXK2 745 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 VRK2Q86Y07 508 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 DND1Q8IYX4 353 aaKnown RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 EID3Q8N140 333 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 OR4C3Q8NH37 302 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 RASSF5Q8WWW0 418 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 LZICQ8WZA0 190 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 TPD52L3Q96J77 140 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 RNF145Q96MT1 663 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 DCAF13Q9NV06 445 aaKnown RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 SLC13A4Q9UKG4 626 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 SAMD4AQ9UPU9 718 aaKnown RBP16.61■□□□□ 0.25
SDC1-203ENST00000403076 V9GYQ6 96 aa16.61■□□□□ 0.25
SDC1-203ENST00000403076 AQP12BA6NM10 295 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 H0YHG0 523 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 SCDO00767 359 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 SUV39H1O43463 412 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 PABPC4LP0CB38 370 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 TBXA2RP21731 343 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CLK3P49761 638 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 RNF144AP50876 292 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 RPP38P78345 283 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 MAPK14Q16539 360 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 NTRK2Q16620 822 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CBLL1Q75N03 491 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 EIF3MQ7L2H7 374 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 AQP12AQ8IXF9 295 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 OR10Q1Q8NGQ4 319 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 TTC9Q92623 222 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 RSRC1Q96IZ7 334 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 DENND2DQ9H6A0 471 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 ANKRD10Q9NXR5 420 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 FLRT3Q9NZU0 649 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 KCNE5Q9UJ90 142 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 IGF2RP11717 2491 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 A0A087WV48 116 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 OXSR1O95747 527 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 F10P00742 488 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CYB561P49447 251 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 HLCSP50747 726 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CXADRP78310 365 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 ELOAQ14241 798 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 ZNF141Q15928 474 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 ZNF791Q3KP31 576 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 LIN52Q52LA3 116 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 AP1ARQ63HQ0 302 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 FKBP9P1Q75LS8 142 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CYP4Z2PQ8N1L4 340 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 FDCSPQ8NFU4 85 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 OR10G3Q8NGC4 313 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 OR52E4Q8NGH9 312 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 HGDQ93099 445 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 NODALQ96S42 347 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 UTP23Q9BRU9 249 aaKnown RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 TBL1XR1Q9BZK7 514 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 ARMC7Q9H6L4 198 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 ZNF552Q9H707 407 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 METTL7AQ9H8H3 244 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 BAG5Q9UL15 447 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 ZNF443Q9Y2A4 671 aaPredicted RBP16.6■□□□□ 0.25
SDC1-203ENST00000403076 DTNAQ9Y4J8 743 aa16.6■□□□□ 0.25
SDC1-203ENST00000403076 CENPVL1A0A0U1RR11 272 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 NPIPB9F8W1W9 429 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 H3BNH8 94 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 PRKD3O94806 890 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 ACTR3P61158 418 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 SELENOWP63302 87 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 ZNF468Q5VIY5 522 aaPredicted RBP16.59■□□□□ 0.25
SDC1-203ENST00000403076 GPALPP1Q8IXQ4 340 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 PROX1Q92786 737 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 HSH2DQ96JZ2 352 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 SEPHS2Q99611 448 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 PINK1Q9BXM7 581 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 OLAHQ9NV23 265 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 PLA2G3Q9NZ20 509 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 KLRF1Q9NZS2 232 aa16.59■□□□□ 0.25
SDC1-203ENST00000403076 GTPBP1O00178 669 aaKnown RBP16.58■□□□□ 0.24
SDC1-203ENST00000403076 SCO2O43819 266 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 TPST1O60507 370 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 WDPCPO95876 746 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 THBS1P07996 1170 aa16.58■□□□□ 0.24
SDC1-203ENST00000403076 NID1P14543 1247 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms