RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF687Q8N1G0 1237 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 OR10H4Q8NGA5 316 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 KIAA1143Q96AT1 154 aaPredicted RBP19.6■□□□□ 0.73
CTCF-202ENST00000401394 C12orf66Q96MD2 445 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 COQ10AQ96MF6 247 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 DPH1Q9BZG8 443 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 OR51V1Q9H2C8 321 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 AHSPQ9NZD4 102 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 TNFRSF10DQ9UBN6 386 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 FLVCR2Q9UPI3 526 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 EXOSC1Q9Y3B2 195 aaKnown RBP19.6■□□□□ 0.73
CTCF-202ENST00000401394 A0A1W2PPV9 198 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 MAGEB1P43366 347 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 PDX1P52945 283 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 DGCR2P98153 550 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 SP3Q02447 781 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 ZNF267Q14586 743 aaPredicted RBP19.6■□□□□ 0.73
CTCF-202ENST00000401394 ZBTB37Q5TC79 503 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 CREB3L2Q70SY1 520 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 NUDT13Q86X67 352 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 KLHL36Q8N4N3 616 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 ZNF680Q8NEM1 530 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 SLC38A1Q9H2H9 487 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 OSGEPL1Q9H4B0 414 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 C20orf141Q9NUB4 165 aa19.6■□□□□ 0.73
CTCF-202ENST00000401394 RNF13O43567 381 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 MT-ND4P03905 459 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 ZGLP1P0C6A0 271 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 NOS3P29474 1203 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 PER3P56645 1201 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 SMIM11AP58511 58 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 ESCO2Q56NI9 601 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 FAM92BQ6ZTR7 304 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 POGLUT1Q8NBL1 392 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 GALNT6Q8NCL4 622 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 CEP76Q8TAP6 659 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 PRRT4C9JH25 899 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 PTHLHP12272 177 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 SNRPBP14678 240 aaKnown RBP19.59■□□□□ 0.73
CTCF-202ENST00000401394 CERS1P27544 350 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 THBS2P35442 1172 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 CLCNKAP51800 687 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 RPA4Q13156 261 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 TIGD3Q6B0B8 471 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 PFN4Q8NHR9 129 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 DIO2Q92813 273 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 RAD51AP1Q96B01 352 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 ARID1BQ8NFD5 2236 aaPredicted RBP19.59■□□□□ 0.73
CTCF-202ENST00000401394 ERI3O43414 337 aaKnown RBP19.59■□□□□ 0.73
CTCF-202ENST00000401394 MPC2O95563 127 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 PCCBP05166 539 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 GCGRP47871 477 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 CRYZQ08257 329 aaKnown RBP19.59■□□□□ 0.73
CTCF-202ENST00000401394 SLC25A30Q5SVS4 291 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 OR4C11Q6IEV9 310 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 CD300LDQ6UXZ3 194 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 ARL14Q8N4G2 192 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 IL17RCQ8NAC3 791 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 OR51L1Q8NGJ5 315 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 RFT1Q96AA3 541 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 MSANTD3Q96H12 275 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 AIF1LQ9BQI0 150 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 OR1A2Q9Y585 309 aa19.59■□□□□ 0.73
CTCF-202ENST00000401394 SLC9B1P1A6NJY1 282 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 DNAJB6O75190 326 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 ADRB1P08588 477 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 RPS7P62081 194 aaKnown RBP19.58■□□□□ 0.73
CTCF-202ENST00000401394 TSPAN31Q12999 210 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 DSG2Q14126 1118 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 ZSWIM7Q19AV6 140 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 TEX261Q6UWH6 196 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 OR7D2Q96RA2 312 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 HEXA-AS1Q9H8Q6 139 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 PAK6Q9NQU5 681 aaPredicted RBP19.58■□□□□ 0.73
CTCF-202ENST00000401394 MRPS18AQ9NVS2 196 aaKnown RBP19.58■□□□□ 0.73
CTCF-202ENST00000401394 SRRDQ9UH36 339 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 SLC7A7Q9UM01 511 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 U3KQ87 197 aa19.58■□□□□ 0.73
CTCF-202ENST00000401394 CACNA1CQ13936 2221 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 HIDE1A8MVS5 230 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 SLC22A5O76082 557 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 FRKP42685 505 aaPredicted RBP19.58■□□□□ 0.72
CTCF-202ENST00000401394 FXYD6P3P58550 94 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 WDR88Q6ZMY6 472 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 SLC16A11Q8NCK7 471 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 ALG8Q9BVK2 526 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 GLTPQ9NZD2 209 aa19.58■□□□□ 0.72
CTCF-202ENST00000401394 A0A1W2PRG6 482 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 OTOL1A6NHN0 477 aaPredicted RBP19.57■□□□□ 0.72
CTCF-202ENST00000401394 OR52A4PA6NMU1 304 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 MOSPD3O75425 235 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 TAS2R38P59533 333 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 RPL6Q02878 288 aaKnown RBP19.57■□□□□ 0.72
CTCF-202ENST00000401394 LCTLQ6UWM7 567 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 KREMEN2Q8NCW0 462 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 PRR23AA6NEV1 266 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 SGK494L7N484 410 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 FGBP02675 491 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 HPXP02790 462 aa19.57■□□□□ 0.72
CTCF-202ENST00000401394 PRKACBP22694 351 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms