RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 OR4A15Q8NGL6 344 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 GTF2H4Q92759 462 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 CIDECQ96AQ7 238 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 SARAFQ96BY9 339 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 LRRC58Q96CX6 371 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 RBM18Q96H35 190 aaKnown RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 JSRP1Q96MG2 331 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 CCDC115Q96NT0 180 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 RAB3IPQ96QF0 476 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 BBS4Q96RK4 519 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 GAL3ST4Q96RP7 486 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 SH3GL1Q99961 368 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 WWTR1Q9GZV5 400 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 MMADHCQ9H3L0 296 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 EXO5Q9H790 373 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 ZFP64Q9NPA5 681 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 ACSS1Q9NUB1 689 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 CCM2LQ9NUG4 571 aaPredicted RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 CNOT11Q9UKZ1 510 aaKnown RBP9.45□□□□□ -0.9
NEDD8-202ENST00000396828 MED12Q93074 2177 aa9.45□□□□□ -0.9
NEDD8-202ENST00000396828 CFAP73A6NFT4 308 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 PGRMC2O15173 223 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 GSC2O15499 205 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 HCN1O60741 890 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 WDR1O75083 606 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 TRIM3O75382 744 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CPSF4O95639 269 aaKnown RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 GPR75O95800 540 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CSNK2A2P19784 350 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 SSTR4P31391 388 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CPOXP36551 454 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 NCBP2P52298 156 aaKnown RBP eCLIP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 FBXW4P57775 412 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 PSME3P61289 254 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 PHC1P78364 1004 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 PLIN5Q00G26 463 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 DUSP8Q13202 625 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 BIKQ13323 160 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 MLC1Q15049 377 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 EBPQ15125 230 aaKnown RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 ZNF385BQ569K4 471 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 LRIF1Q5T3J3 769 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 WLSQ5T9L3 541 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 FNDC7Q5VTL7 733 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 ZNF621Q6ZSS3 439 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 ST13P4Q8IZP2 240 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CLECL1Q8IZS7 167 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 FBXO27Q8NI29 283 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 NEIL3Q8TAT5 605 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 SLC22A8Q8TCC7 542 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 OR5P2Q8WZ92 322 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 RIT1Q92963 219 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 GPATCH1Q9BRR8 931 aaKnown RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 TMUB1Q9BVT8 246 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 NEUROD4Q9HD90 331 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 SPAG4Q9NPE6 437 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 SERHLQ9NQF3 203 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 DNAJB12Q9NXW2 375 aaKnown RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 TAS2R9Q9NYW1 312 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CRIM1Q9NZV1 1036 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 CES1P1Q9UKY3 287 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 PRPF19Q9UMS4 504 aaKnown RBP9.44□□□□□ -0.9
NEDD8-202ENST00000396828 MPDZO75970 2070 aa9.44□□□□□ -0.9
NEDD8-202ENST00000396828 EXPH5Q8NEV8 1989 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 FAM221AA4D161 298 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 SYNDIG1LA6NDD5 238 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 MYO1GB0I1T2 1018 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 SCN2BO60939 215 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 C6orf47O95873 294 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 ABCB1P08183 1280 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 ZCCHC18P0CG32 403 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 PPIBP23284 216 aaKnown RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 GPC1P35052 558 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 PGM1P36871 562 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 FRKP42685 505 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 XKP51811 444 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 CAPRIN1Q14444 709 aaKnown RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 NTRK2Q16620 822 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 SPATS1Q496A3 300 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 DCST1Q5T197 706 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 RIPPLY2Q5TAB7 128 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 DLEU7Q6UYE1 221 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 DNAJC14Q6Y2X3 702 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 RNF111Q6ZNA4 994 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 ZNF441Q8N8Z8 693 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 SIMC1Q8NDZ2 872 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 OR8J3Q8NGG0 315 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 GOT1L1Q8NHS2 421 aaPredicted RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 POM121Q96HA1 1249 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 GNRHR2Q96P88 292 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 CGREF1Q99674 301 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 TIMP4Q99727 224 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 INPP5KQ9BT40 448 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 THTPAQ9BU02 230 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 THUMPD3Q9BV44 507 aaKnown RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 PAIP1Q9H074 479 aaKnown RBP9.43□□□□□ -0.9
NEDD8-202ENST00000396828 CXXC4Q9H2H0 198 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 ACKR4Q9NPB9 350 aa9.43□□□□□ -0.9
NEDD8-202ENST00000396828 ADA2Q9NZK5 511 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms