RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLITRK5O94991 958 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 AIFM1O95831 613 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 ANGPTL1O95841 491 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 BCHEP06276 602 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 HTR1AP08908 422 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 SLC35E2P0CK97 266 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 NTSP30990 170 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 GPC1P35052 558 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 CDH12P55289 794 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 CXADRP78310 365 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 TP53BP2Q13625 1128 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 ELAVL1Q15717 326 aaKnown RBP9.46□□□□□ -0.9
VPS53-202ENST00000389040 CYP27C1Q4G0S4 372 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 RPS26P11Q5JNZ5 115 aaPredicted RBP9.46□□□□□ -0.9
VPS53-202ENST00000389040 DCAF10Q5QP82 559 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 PLAG1Q6DJT9 500 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 ANKRD37Q7Z713 158 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 SPARTQ8N0X7 666 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 BPIFB6Q8NFQ5 453 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 OR4K14Q8NGD5 310 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 OR13F1Q8NGS4 319 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 M1APQ8TC57 530 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 GIPC3Q8TF64 312 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 SGCDQ92629 289 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 RNF31Q96EP0 1072 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 TMEM19Q96HH6 336 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 PITX2Q99697 317 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 GLIPR2Q9H4G4 154 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 LIN28AQ9H9Z2 209 aaKnown RBP9.46□□□□□ -0.9
VPS53-202ENST00000389040 CPNE5Q9HCH3 593 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 SH3GLB1Q9Y371 365 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 PCDHGB7Q9Y5F8 929 aa9.46□□□□□ -0.9
VPS53-202ENST00000389040 CHD8Q9HCK8 2581 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 GLOD5A6NK44 160 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 E9PQ18 207 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 HMGN4O00479 90 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 PRKRAO75569 313 aaKnown RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 CDC123O75794 336 aaPredicted RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 IFNW1P05000 195 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 IFI6P09912 130 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 CSNK2A2P19784 350 aaPredicted RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 EPHA2P29317 976 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 NCBP2P52298 156 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS53-202ENST00000389040 NPRL3Q12980 569 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 SRSF6Q13247 344 aaKnown RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 MICAQ29983 383 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 EXOC3L2Q2M3D2 409 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 GPR107Q5VW38 600 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 C18orf63Q68DL7 685 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 SHISA6Q6ZSJ9 500 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 TSPYL5Q86VY4 417 aaPredicted RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 PRSS58Q8IYP2 241 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 LSM14AQ8ND56 463 aaKnown RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 MORN4Q8NDC4 146 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 OR10G2Q8NGC3 310 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 OR52J3Q8NH60 311 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 OR14A16Q8NHC5 309 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 RAB8BQ92930 207 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 ANKRD9Q96BM1 317 aaPredicted RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 C12orf43Q96C57 262 aaKnown RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 MAGED4Q96JG8 741 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 ART5Q96L15 291 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 IMMP1LQ96LU5 166 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 BBS4Q96RK4 519 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 CSF3RQ99062 836 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 FEVQ99581 238 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 DOK1Q99704 481 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 PIP5K1AQ99755 562 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 ALOXE3Q9BYJ1 711 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 SERHL2Q9H4I8 314 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 GIMAP4Q9NUV9 329 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 PAK1IP1Q9NWT1 392 aaPredicted RBP9.45□□□□□ -0.9
VPS53-202ENST00000389040 CES1P1Q9UKY3 287 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 BOLA1Q9Y3E2 137 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 ZNF451Q9Y4E5 1061 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 CLDN16Q9Y5I7 305 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 SNX5Q9Y5X3 404 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 KCNMB2Q9Y691 235 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 ZNF780BQ9Y6R6 833 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 SPTBP11277 2137 aa9.45□□□□□ -0.9
VPS53-202ENST00000389040 TMEM247A6NEH6 219 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 WASHC1A8K0Z3 465 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PTGES3LE9PB15 166 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 J3KTA2 159 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PGRMC2O15173 223 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SEC14L2O76054 403 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PDE9AO76083 593 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ATP1B1P05026 303 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PRKAR1AP10644 381 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 COX6A1P12074 109 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MAOAP21397 527 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MPIP34949 423 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 STT3AP46977 705 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 CXCR4P61073 352 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 RPP38P78345 283 aaKnown RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 BTG2P78543 158 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 KCNC4Q03721 635 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PIGFQ07326 219 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 TUBA3CQ13748 450 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MAD2L1BPQ15013 274 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms