RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TMEM35AQ53FP2 167 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 OR4C11Q6IEV9 310 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 FBXO42Q6P3S6 717 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 IDO2Q6ZQW0 420 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CCDC71Q8IV32 467 aaPredicted RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SLC5A8Q8N695 610 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 BMPERQ8N8U9 685 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 AMER3Q8N944 861 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF540Q8NDQ6 660 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ZHX1-C8orf76Q96EF9 292 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TEFMQ96QE5 360 aaKnown RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SIGLEC11Q96RL6 698 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CCDC32Q9BV29 185 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 GON7Q9BXV9 100 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 FGF21Q9NSA1 209 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SIDT1Q9NXL6 827 aaKnown RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SEMA5BQ9P283 1151 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 PCDHGA6Q9Y5G7 932 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ENPP4Q9Y6X5 453 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ZFHX4Q86UP3 3567 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TRABD2BA6NFA1 517 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 C5orf58C9J3I9 102 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CCRL2O00421 344 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SHOXO15266 292 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TOX3O15405 576 aaPredicted RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 WBP4O75554 376 aaKnown RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 PDE9AO76083 593 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 MFN2O95140 757 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TNFSF15O95150 251 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 DRD2P14416 443 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 RHCEP18577 417 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 AHRP35869 848 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 GGT2P36268 569 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 MASP1P48740 699 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 OR2B6P58173 313 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CARTPTQ16568 116 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 EXOC3L2Q2M3D2 409 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 COLEC12Q5KU26 742 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 PAQR7Q86WK9 346 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 LIX1LQ8IVB5 337 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ENTHD1Q8IYW4 607 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SLC38A6Q8IZM9 456 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 LGI4Q8N135 537 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 HORMAD2Q8N7B1 307 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 FCGR1BQ92637 280 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TCTN2Q96GX1 697 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 KCNC2Q96PR1 638 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SPRTNQ9H040 489 aaPredicted RBP13.32□□□□□ -0.28
HMGA1-203ENST00000374116 DCSTAMPQ9H295 470 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 FKBP14Q9NWM8 211 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 SLC39A1Q9NY26 324 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 ENOPH1Q9UHY7 261 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 TRAPPC4Q9Y296 219 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 B3GALT1Q9Y5Z6 326 aa13.32□□□□□ -0.28
HMGA1-203ENST00000374116 CACNA1AO00555 2505 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 LAMA5O15230 3695 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 PNMA8CA0A1B0GUJ8 204 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 OR2A25A4D2G3 310 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 EFCAB9A8MZ26 197 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 LOC110117498-PIK3R3F6TDL0 507 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ERVH48-1M5A8F1 160 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 IFNW1P05000 195 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 KRT20P35900 424 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 RPS5P46782 204 aaKnown RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 LIMS1P48059 325 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 GABRA4P48169 554 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 VSX2P58304 361 aaPredicted RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 SNRPNP63162 240 aaKnown RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 GPR50Q13585 617 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 SPDYE7PQ495Y7 208 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 MLIPQ5VWP3 458 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF793Q6ZN11 406 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 C6orf120Q7Z4R8 191 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF605Q86T29 641 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ELMOD2Q8IZ81 293 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 FAM109AQ8N4B1 249 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 DNAJC22Q8N4W6 341 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 OR52J3Q8NH60 311 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 OR1L3Q8NH93 324 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 WDR36Q8NI36 951 aaKnown RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 SLC38A5Q8WUX1 472 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 PIK3R3Q92569 461 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 EXOSC8Q96B26 276 aaKnown RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF556Q9HAH1 456 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 RASSF1Q9NS23 344 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 PLCXD1Q9NUJ7 323 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ACER3Q9NUN7 267 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ACOXLQ9NUZ1 547 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 EHD3Q9NZN3 535 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 FOXJ2Q9P0K8 574 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 AKAP7Q9P0M2 348 aaPredicted RBP13.31□□□□□ -0.28
HMGA1-203ENST00000374116 AASSQ9UDR5 926 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 PILRAQ9UKJ1 303 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 ZNF451Q9Y4E5 1061 aa13.31□□□□□ -0.28
HMGA1-203ENST00000374116 TEX51A0A1B0GUA7 166 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 ARRDC5A6NEK1 342 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 HMX3A6NHT5 357 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 ZSCAN5BA6NJL1 495 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 GADD45GO95257 159 aa13.3□□□□□ -0.28
HMGA1-203ENST00000374116 MED26O95402 600 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms