RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PKDCCQ504Y2 493 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 OR6C4Q8NGE1 309 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 TMEM239Q8WW34 195 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 TMEM121BQ9BXQ6 578 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 RGCCQ9H4X1 137 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 CLMPQ9H6B4 373 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 FZD3Q9NPG1 666 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 CUEDC1Q9NWM3 386 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 C2orf42Q9NWW7 574 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 GPR34Q9UPC5 381 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 B3GNT3Q9Y2A9 372 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ENTPD2Q9Y5L3 495 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 SBF2Q86WG5 1849 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 HMX3A6NHT5 357 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF850A8MQ14 1090 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF705EA8MWA4 302 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ITGAMP11215 1152 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 POU3F4P49335 361 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 HHEXQ03014 270 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 MRPL49Q13405 166 aaKnown RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 TRNP1Q6NT89 227 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 FAM198BQ6UWH4 519 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 USP53Q70EK8 1073 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 OR13C3Q8NGS6 347 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PRRC1Q96M27 445 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 FBRSQ9HAH7 460 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 NAP1L6A6NFF2 107 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 FRS3O43559 492 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ADAMTS4O75173 837 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 IFNA5P01569 189 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 C21orf33P30042 268 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 BMPR1AP36894 532 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SOX3P41225 446 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 WDR5P61964 334 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 NTHL1P78549 312 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CCINQ13939 588 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 HES5Q5TA89 166 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 METTL11BQ5VVY1 283 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 RETREG3Q86VR2 466 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZMYND19Q96E35 227 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 KLHL15Q96M94 604 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PAPPA2Q9BXP8 1791 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SC5DO75845 299 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 JMJD7P0C870 316 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CPOXP36551 454 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 DUSP3P51452 185 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 MAP4K2Q12851 820 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SF3A2Q15428 464 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 LIPIQ6XZB0 460 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ACOT4Q8N9L9 421 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SLC22A8Q8TCC7 542 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 GPR148Q8TDV2 347 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ASB11Q8WXH4 323 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SERINC2Q96SA4 455 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CPEB1Q9BZB8 566 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 NKX2-4Q9H2Z4 354 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 H3BUI4 141 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SLC5A2P31639 672 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 HNRNPKP61978 463 aaKnown RBP eCLIP10.78□□□□□ -0.684e-6■■□□□ 12.4
PTPRF-203ENST00000372407 CYCSP99999 105 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 HNRNPA1L2Q32P51 320 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 FAM205BPQ63HN1 556 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 NADSYN1Q6IA69 706 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 TMPPEQ6ZT21 453 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 RAB11FIP2Q7L804 512 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 HSD11B1LQ7Z5J1 315 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PDZD3Q86UT5 571 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CPXM2Q8N436 756 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 COQ10AQ96MF6 247 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 NAA11Q9BSU3 229 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 TEX10Q9NXF1 929 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF226Q9NYT6 803 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SLC7A7Q9UM01 511 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PRAF2O60831 178 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ATE1O95260 518 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF35P13682 527 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF14P17017 642 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 FUT1P19526 365 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CD34P28906 385 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 THBS2P35442 1172 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 RGRP47804 291 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 LSSP48449 732 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 GIPRP48546 466 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 EIF2S3LQ2VIR3 472 aaKnown RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 CARD17Q5XLA6 110 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 TRIM46Q7Z4K8 759 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PLXDC1Q8IUK5 500 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PM20D2Q8IYS1 436 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 OR6Q1Q8NGQ2 317 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 RHOXF1Q8NHV9 184 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF417Q8TAU3 575 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 GAB3Q8WWW8 586 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 LMF1Q96S06 567 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 KLF16Q9BXK1 252 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 PITHD1Q9GZP4 211 aaPredicted RBP10.78□□□□□ -0.68
PTPRF-203ENST00000372407 SAP130Q9H0E3 1048 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF442Q9H7R0 627 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 KLF15Q9UIH9 416 aa10.78□□□□□ -0.68
PTPRF-203ENST00000372407 C7orf72A4D263 438 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 BPNT1O95861 308 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms