RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 TUSC5Q8IXB3 177 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 CEP112Q8N8E3 955 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 DUSP19Q8WTR2 217 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 EXT2Q93063 718 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 KCTD12Q96CX2 325 aaKnown RBP12.91□□□□□ -0.34
VAMP4-202ENST00000367740 MUCL1Q96DR8 90 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 ZNF747Q9BV97 191 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 SDHAF3Q9NRP4 125 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 STOML1Q9UBI4 398 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 ABCG2Q9UNQ0 655 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 MGAT4BQ9UQ53 548 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 VDAC3Q9Y277 283 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 FKBP7Q9Y680 259 aa12.91□□□□□ -0.34
VAMP4-202ENST00000367740 A0A0J9YW62 118 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 LOC390937A0A1W2PQ73 354 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 K7EPI3 171 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 GMFGO60234 142 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 DHRS4L1P0CG22 281 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 CD1DP15813 335 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 CSNK2A2P19784 350 aaPredicted RBP12.9□□□□□ -0.34
VAMP4-202ENST00000367740 PHEXP78562 749 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 MRPS22P82650 360 aaKnown RBP12.9□□□□□ -0.34
VAMP4-202ENST00000367740 ZNF239Q16600 458 aaKnown RBP12.9□□□□□ -0.34
VAMP4-202ENST00000367740 ZSWIM7Q19AV6 140 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 TIMM23BQ5SRD1 257 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 HBMQ6B0K9 141 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 GTF2IRD2BQ6EKJ0 949 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 TMEM108Q6UXF1 575 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 Q6ZT83 130 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 ESPNLQ6ZVH7 1005 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 TBC1D1Q86TI0 1168 aaPredicted RBP12.9□□□□□ -0.34
VAMP4-202ENST00000367740 GTF2IRD2Q86UP8 949 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 PPIL6Q8IXY8 311 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 OR2W6PQ8NHA6 318 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 NAT9Q9BTE0 207 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 OPTCQ9UBM4 332 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 PCDHGA11Q9Y5H2 935 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 PCDHA9Q9Y5H5 950 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 PMF1-BGLAPU3KQ54 211 aa12.9□□□□□ -0.34
VAMP4-202ENST00000367740 HEATR1Q9H583 2144 aaKnown RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 H0YIV9 168 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 TRIM77I1YAP6 450 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 S100BP04271 92 aaPredicted RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 BMP4P12644 408 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 CD40P25942 277 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 HILS1P60008 231 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 PSPHP78330 225 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 CHRNB3Q05901 458 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 ZNF628Q5EBL2 1059 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 RNASEH2BQ5TBB1 312 aaKnown RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 SHISA2Q6UWI4 295 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 MARCH3Q86UD3 253 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 SLC44A2Q8IWA5 706 aaPredicted RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 LINC01356Q8N9X3 169 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 WDR20Q8TBZ3 569 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 ZNF418Q8TF45 676 aaPredicted RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 UBTD2Q8WUN7 234 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 KLHL29Q96CT2 875 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 MTBPQ96DY7 904 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 CNRIP1Q96F85 164 aaPredicted RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 CFAP36Q96G28 342 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 ZNF681Q96N22 645 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 INPP5KQ9BT40 448 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 TRMOQ9BU70 441 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 RBM4Q9BWF3 364 aaKnown RBP12.89□□□□□ -0.35
VAMP4-202ENST00000367740 TMEM185BQ9H7F4 350 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 PRSS50Q9UI38 385 aa12.89□□□□□ -0.35
VAMP4-202ENST00000367740 IGLV3-32A0A0A0MS00 114 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 C1orf226A1L170 272 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 SEMA3DO95025 777 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 PGM3O95394 542 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 KLK1P06870 262 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 COX5AP20674 150 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 PTAFRP25105 342 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 PSMA4P25789 261 aaKnown RBP12.88□□□□□ -0.35
VAMP4-202ENST00000367740 ARFIP2P53365 341 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 CDH15P55291 814 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 MORF4L2Q15014 288 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 RNPS1Q15287 305 aaKnown RBP12.88□□□□□ -0.35
VAMP4-202ENST00000367740 SSX8Q7RTT4 187 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 GTPBP8Q8N3Z3 284 aaPredicted RBP12.88□□□□□ -0.35
VAMP4-202ENST00000367740 ZNF675Q8TD23 568 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 MCMBPQ9BTE3 642 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 SRXN1Q9BYN0 137 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 CAB39LQ9H9S4 337 aa12.88□□□□□ -0.35
VAMP4-202ENST00000367740 MYOZ1Q9NP98 299 aaPredicted RBP12.88□□□□□ -0.35
VAMP4-202ENST00000367740 FAM120CQ9NX05 1096 aaKnown RBP12.88□□□□□ -0.35
VAMP4-202ENST00000367740 OR5H1A6NKK0 313 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 PHGDHO43175 533 aaKnown RBP12.87□□□□□ -0.35
VAMP4-202ENST00000367740 PABPC4LP0CB38 370 aaKnown RBP12.87□□□□□ -0.35
VAMP4-202ENST00000367740 GGT1P19440 569 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 IGHV1-2P23083 117 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 EDNRAP25101 427 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 APEX1P27695 318 aaKnown RBP12.87□□□□□ -0.35
VAMP4-202ENST00000367740 ZNF83P51522 516 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 RAC1P63000 192 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 ACAP2Q15057 778 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 CPSF6Q16630 551 aaKnown RBP eCLIP12.87□□□□□ -0.35
VAMP4-202ENST00000367740 SWI5Q1ZZU3 235 aa12.87□□□□□ -0.35
VAMP4-202ENST00000367740 MST1LQ2TV78 715 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms