RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TBL1XO60907 577 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 HLA-DOBP13765 273 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 PPA1Q15181 289 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 NTPCRQ9BSD7 190 aaKnown RBP11.97□□□□□ -0.49
COL6A3-203ENST00000353578 ABI3Q9P2A4 366 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 POU2F3Q9UKI9 436 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SNCGO76070 127 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 TLE1Q04724 770 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 NOXRED1Q6NXP6 359 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SORCS2Q96PQ0 1159 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 SIX2Q9NPC8 291 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 DMAC2Q9NW81 257 aa11.97□□□□□ -0.49
COL6A3-203ENST00000353578 NTSR2O95665 410 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF43P17038 809 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 POU3F3P20264 500 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-203ENST00000353578 HFE2Q6ZVN8 426 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 ATG4CQ96DT6 458 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 ENDOD1O94919 500 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 DRD2P14416 443 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 LYSMD3Q7Z3D4 306 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF695Q8IW36 515 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 GPC2Q8N158 579 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 LHFPL5Q8TAF8 219 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 TP53TG5Q9Y2B4 290 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 TRDV1A0A1B0GX56 115 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 VTNP04004 478 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 PSMB3P49720 205 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 FAM171A1Q5VUB5 890 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 TDRD6O60522 2096 aaKnown RBP11.96□□□□□ -0.49
COL6A3-203ENST00000353578 ANKUB1A6NFN9 424 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 TP53I11O14683 189 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 AQP8O94778 261 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 DCTP40126 519 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 GALNT2Q10471 571 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 MPEG1Q2M385 716 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 PURGQ9UJV8 347 aaKnown RBP11.96□□□□□ -0.49
COL6A3-203ENST00000353578 CKAP5Q14008 2032 aa11.96□□□□□ -0.49
COL6A3-203ENST00000353578 PRR36Q9H6K5 1346 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 ARNTLO00327 626 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 CTSHP09668 335 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 CCR7P32248 378 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 RNF144AP50876 292 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 NDUFA6P56556 154 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 YIF1BQ5BJH7 314 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 OR4E2Q8NGC2 313 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 DAZAP1Q96EP5 407 aaKnown RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 SIGLEC10Q96LC7 697 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 CMSS1Q9BQ75 279 aaKnown RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 CHRDL1Q9BU40 450 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 RHBGQ9H310 441 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 BPIFA1Q9NP55 256 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PIGVQ9NUD9 493 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 T-ENOLP0DO92 83 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PRPH2P23942 346 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 GTF2A2P52657 109 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 ENDOGQ14249 297 aaKnown RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 GFOD2Q3B7J2 385 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 TMEM35AQ53FP2 167 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PDSS1Q5T2R2 415 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 ZNF485Q8NCK3 441 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 SPRYD4Q8WW59 207 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 FGGYQ96C11 551 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 THSD1Q9NS62 852 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 KCNIP1Q9NZI2 227 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 C9JVG2 144 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 TPOP07202 933 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PIPP12273 146 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 TIA1P31483 386 aaKnown RBP eCLIP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 ARL2P36404 184 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PRAMEF14Q5SWL7 426 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 OR4F3Q6IEY1 312 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 ALKAL2Q6UX46 152 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 FUBP3Q96I24 572 aaKnown RBP eCLIP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 OR7D2Q96RA2 312 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 HOXD1Q9GZZ0 328 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 LDAHQ9H6V9 325 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 FOXO6A8MYZ6 492 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 TPPP2P59282 170 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 HIST1H3AP68431 136 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 BSCL2Q96G97 398 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-203ENST00000353578 VAMP8Q9BV40 100 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 PRODH2Q9UF12 536 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 KCNG2Q9UJ96 466 aa11.96□□□□□ -0.5
COL6A3-203ENST00000353578 NUP188Q5SRE5 1749 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 HPGDSO60760 199 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 WDR5P61964 334 aaKnown RBP11.95□□□□□ -0.5
COL6A3-203ENST00000353578 MAT1AQ00266 395 aaKnown RBP11.95□□□□□ -0.5
COL6A3-203ENST00000353578 HTR4Q13639 388 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 APOOLQ6UXV4 268 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 CATSPERGQ6ZRH7 1159 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 USP51Q70EK9 711 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 ADAMTS18Q8TE60 1221 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 GNPNAT1Q96EK6 184 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-203ENST00000353578 ASAH2Q9NR71 780 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 OLAHQ9NV23 265 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 AHCYP23526 432 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 SF3B4Q15427 424 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL6A3-203ENST00000353578 FAM182AQ5T1J6 154 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 PAQR3Q6TCH7 311 aa11.95□□□□□ -0.5
COL6A3-203ENST00000353578 NAXDQ8IW45 347 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms