RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SGSHP51688 502 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 TAS2R43P59537 309 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 HBA1P69905 142 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 RBM39Q14498 530 aaKnown RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 ACSM3Q53FZ2 586 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SHISA6Q6ZSJ9 500 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF767PQ75MW2 155 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 KCTD20Q7Z5Y7 419 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF527Q8NB42 609 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 TSACCQ96A04 125 aaPredicted RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 SLC22A18Q96BI1 424 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF419Q96HQ0 510 aaPredicted RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 HINT2Q9BX68 163 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 POPDC3Q9HBV1 291 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 NDUFAF4Q9P032 175 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 WASHC1A8K0Z3 465 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 B4GALT3O60512 393 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 CDK1P06493 297 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SNRNP70P08621 437 aaKnown RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 GP1BBP13224 206 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ADRB3P13945 408 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 DNAJB1P25685 340 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 MLLT3P42568 568 aaPredicted RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 DAPP51397 102 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 KIAA1024LP59773 190 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SHC2P98077 582 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF33AQ06730 810 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.21□□□□□ -1.09
RTN3-202ENST00000339997 ARHGAP40Q5TG30 622 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SLC16A9Q7RTY1 509 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 GID4Q8IVV7 300 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 TMEFF1Q8IYR6 380 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 PRR18Q8N4B5 295 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 OR9A2Q8NGT5 310 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 OR2T11Q8NH01 316 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF583Q96ND8 569 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 RHNO1Q9BSD3 238 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 NTMT1Q9BV86 223 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 SLC6A16Q9GZN6 736 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 NXF5Q9H1B4 397 aaKnown RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 VRTNQ9H8Y1 702 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 PCDHB16Q9NRJ7 776 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 CLEC2DQ9UHP7 191 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ZNF223Q9UK11 482 aaPredicted RBP8.21□□□□□ -1.09
RTN3-202ENST00000339997 CACNG2Q9Y698 323 aa8.21□□□□□ -1.09
RTN3-202ENST00000339997 ALPK2Q86TB3 2170 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ANTXRLA6NF34 631 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 SOBPA7XYQ1 873 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 CLEC3AO75596 197 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 MAPK3P27361 379 aaPredicted RBP8.21□□□□□ -1.1
RTN3-202ENST00000339997 PSMB5P28074 263 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 GGT2P36268 569 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 CTXN1P60606 82 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 GRIK2Q13002 908 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 LRRC26Q2I0M4 334 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 PUS10Q3MIT2 529 aaKnown RBP8.21□□□□□ -1.1
RTN3-202ENST00000339997 UGT3A2Q3SY77 523 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 SUN3Q8TAQ9 357 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 CRYGNQ8WXF5 182 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 DCUN1D4Q92564 292 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 IRF7Q92985 503 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 LRRC46Q96FV0 321 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 PEX11GQ96HA9 241 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 METTL7AQ9H8H3 244 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 RXFP3Q9NSD7 469 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 IER3IP1Q9Y5U9 82 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ACOD1A6NK06 481 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 SLC22A31A6NKX4 558 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ACOT8O14734 319 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 LDB3O75112 727 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 FGF4P08620 206 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 SMIM18P0DKX4 95 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 CHRNB1P11230 501 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 PLEKHS1Q5SXH7 462 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ANKLE1Q8NAG6 615 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ZNF740Q8NDX6 193 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 TMIEQ8NEW7 156 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 OR4K17Q8NGC6 315 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ABHD5Q8WTS1 349 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 SLAMF9Q96A28 289 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ATOH8Q96SQ7 321 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 ST6GALNAC5Q9BVH7 336 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 R3HDMLQ9H3Y0 253 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 RLIMQ9NVW2 624 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 IL17CQ9P0M4 197 aa8.21□□□□□ -1.1
RTN3-202ENST00000339997 LOC285095A0A1B0GVY8 99 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 GSRP00390 522 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 GASTP01350 101 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 CAMLGP49069 296 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 CTSCP53634 463 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 ZNF91Q05481 1191 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 GALNT1Q10472 559 aaPredicted RBP8.2□□□□□ -1.1
RTN3-202ENST00000339997 NOGQ13253 232 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 EIF2B1Q14232 305 aaKnown RBP8.2□□□□□ -1.1
RTN3-202ENST00000339997 ZNF691Q5VV52 312 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 NXPE4Q6UWF7 544 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 C3P1Q6ZMU1 363 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 NDUFAF7Q7L592 441 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 SLC29A4Q7RTT9 530 aa8.2□□□□□ -1.1
RTN3-202ENST00000339997 ARHGAP12Q8IWW6 846 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms