RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 NDUFAF1Q9Y375 327 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 NCKAP5O14513 1909 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SCDO00767 359 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 TRAPPC6AO75865 159 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 ANGPTL1O95841 491 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 NGFRP08138 427 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 HOXB9P17482 250 aaPredicted RBP14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 DCTP40126 519 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 CRATP43155 626 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 TXNL4AP83876 142 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 FUT5Q11128 374 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 HEPHL1Q6MZM0 1159 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 APOOLQ6UXV4 268 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 MSRB3Q8IXL7 192 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 GATSQ8NAP1 163 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 OR4K17Q8NGC6 315 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 ROPN1LQ96C74 230 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 UBQLN3Q9H347 655 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 LDAHQ9H6V9 325 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 EXO5Q9H790 373 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SDHAF3Q9NRP4 125 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 QPCTLQ9NXS2 382 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SLC25A37Q9NYZ2 338 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 CAPN7Q9Y6W3 813 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 A0A1B0GTH9 108 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ALG1L2C9J202 215 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 CLIC1O00299 241 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ADAM10O14672 748 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 STX11O75558 287 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ETFAP13804 333 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 RNF144AP50876 292 aaPredicted RBP14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 MVDP53602 400 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 HPCAP84074 193 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 GPR68Q15743 365 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 GPAT3Q53EU6 434 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 TRILQ7L0X0 811 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 DHDDSQ86SQ9 333 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 RETREG3Q86VR2 466 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 SPPL2CQ8IUH8 684 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ZNF527Q8NB42 609 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 TSPEARQ8WU66 669 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ZNF350Q9GZX5 532 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 HOXD1Q9GZZ0 328 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 SLC6A15Q9H2J7 730 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 PLSCR2Q9NRY7 297 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 VAPAQ9P0L0 249 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 ARMCX1Q9P291 453 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 FBXL2Q9UKC9 423 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 MKLN1Q9UL63 735 aa14.49□□□□□ -0.09
CCDC28A-201ENST00000332797 MYO18BQ8IUG5 2567 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 PRAMEF27A3QJZ7 478 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 NDUFB5O43674 189 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 SNX3O60493 162 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 FCMRO60667 390 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 SLC19A2O60779 497 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 CCDC22O60826 627 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 CBR3O75828 277 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 IGHG3P01860 377 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 HPNP05981 417 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 ABOP16442 354 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 DSTNP60981 165 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 KCNC4Q03721 635 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 MAPRE2Q15555 327 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 SYPL1Q16563 259 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 ARHGAP11AQ6P4F7 1023 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 FGD2Q7Z6J4 655 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 CHERPQ8IWX8 916 aaKnown RBP14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 DPP10Q8N608 796 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 ZNF614Q8N883 585 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 DUSP19Q8WTR2 217 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 DSN1Q9H410 356 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 RAD21L1Q9H4I0 556 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 MED11Q9P086 117 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 DKKL1Q9UK85 242 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 WDR45Q9Y484 360 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 SVILO95425 2214 aa14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 HELZ2Q9BYK8 2649 aaKnown RBP14.48□□□□□ -0.09
CCDC28A-201ENST00000332797 TRGV5A0A0B4J1U4 118 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 A0A1W2PQD3 144 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 B4DXG7 233 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 GMFGO60234 142 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 HCN1O60741 890 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 ZIC2O95409 532 aaPredicted RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 H6PDO95479 791 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 MAGEA8P43361 318 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 ATP12AP54707 1039 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 C17orf67Q0P5P2 114 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 NFYCQ13952 458 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 EIPR1Q53HC9 387 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 TYW3Q6IPR3 259 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 DLEU7Q6UYE1 221 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 YRDCQ86U90 279 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 MTDHQ86UE4 582 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 SNX32Q86XE0 403 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 ANKFN1Q8N957 763 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 FAM83FQ8NEG4 500 aaPredicted RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 DTNBP1Q96EV8 351 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 TRNT1Q96Q11 434 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 ACKR4Q9NPB9 350 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms