RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KIR2DS3Q14952 304 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 SF3A2Q15428 464 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 NSDHLQ15738 373 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 DUS1LQ6P1R4 473 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 MFSD6LQ8IWD5 586 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ZNF619Q8N2I2 560 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 OR8J2Q8NGG1 315 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 OR5W2Q8NH69 310 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 DEDD2Q8WXF8 326 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ZMYND19Q96E35 227 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 MS4A4AQ96JQ5 239 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 SORBS1Q9BX66 1292 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 ACSS1Q9NUB1 689 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 OLAHQ9NV23 265 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 TRAV18A0A075B6X5 111 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 H0YIV9 168 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 APOC3P02656 99 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 PTH2RP49190 550 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 GNMTQ14749 295 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 PDZD9Q8IXQ8 264 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ZSCAN4Q8NAM6 433 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 WASF3Q9UPY6 502 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 NOX1Q9Y5S8 564 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 A0A1B0GVG6 124 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 NAP1L6A6NFF2 107 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 FUT1P19526 365 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 HIST1H1TP22492 207 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 HOXC13P31276 330 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 HNRNPKP61978 463 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-201ENST00000263398 SNRPD2P62316 118 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 MLLT11Q13015 90 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 SPCS2Q15005 226 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ARL6IP1Q15041 203 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 SMN1Q16637 294 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 HES5Q5TA89 166 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ARSKQ6UWY0 536 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 GALNT11Q8NCW6 608 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 OR13C3Q8NGS6 347 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 GGHQ92820 318 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 MR1Q95460 341 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ZNF486Q96H40 463 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 KLHL15Q96M94 604 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 OR6C2Q9NZP2 312 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 SEMA4FO95754 770 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 IL1AP01583 271 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 AMY2AP04746 511 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 POLR2IP36954 125 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 RABIFP47224 123 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ZNF91Q05481 1191 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 PODNL1Q6PEZ8 512 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 PLXDC1Q8IUK5 500 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 PGBD5Q8N414 524 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ASB12Q8WXK4 309 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 HOXB13Q92826 284 aaPredicted RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 TANKQ92844 425 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 LPAR4Q99677 370 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 NAA50Q9GZZ1 169 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 SACM1LQ9NTJ5 587 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 ARID1BQ8NFD5 2236 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 LILRB3O75022 631 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 GJB3O75712 270 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 OR7A10O76100 309 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 PNMTP11086 282 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 TNFSF8P32971 234 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 TAP2Q03519 686 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 TP53I3Q53FA7 332 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 C6orf132Q5T0Z8 1188 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 METTL11BQ5VVY1 283 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 AGAP6Q5VW22 663 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SSX6Q7RTT6 188 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 TAS1R1Q7RTX1 841 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 PTRH1Q86Y79 214 aaKnown RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 KIF18BQ86Y91 864 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SLC22A8Q8TCC7 542 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 GPR148Q8TDV2 347 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SPRYD4Q8WW59 207 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 CNOT9Q92600 299 aaKnown RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 MUL1Q969V5 352 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 AGAP4Q96P64 663 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 OR1F2PQ96R84 312 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 PITX2Q99697 317 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 APOOQ9BUR5 198 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 C1QTNF2Q9BXJ5 285 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 ALOXE3Q9BYJ1 711 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 HCFC1R1Q9NWW0 138 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 C2orf42Q9NWW7 574 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 HIF3AQ9Y2N7 669 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 FOXE1O00358 373 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 PAHP00439 452 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 THEGLP0DJG4 465 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 HLA-FP30511 346 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 GNRHRP30968 328 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 CDK3Q00526 305 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 GALK2Q01415 458 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 RHEBQ15382 184 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 FAM83HQ6ZRV2 1179 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 USP53Q70EK8 1073 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 NOXA1Q86UR1 476 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 FUNDC1Q8IVP5 155 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 METTL4Q8N3J2 472 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms