RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 COL13A1Q5TAT6 717 aaPredicted RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 RDH10Q8IZV5 341 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 CLDN22Q8N7P3 220 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 BMPERQ8N8U9 685 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 GDPD1Q8N9F7 314 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 SLC37A3Q8NCC5 494 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 OR52E1Q8NGJ3 308 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 DEDD2Q8WXF8 326 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 MS4A6EQ96DS6 147 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 SLC35A4Q96G79 324 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 WDFY2Q96P53 400 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 FAIM2Q9BWQ8 316 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 SLC6A20Q9NP91 592 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 USP36Q9P275 1121 aaKnown RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 TNFRSF10DQ9UBN6 386 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 APOBEC3BQ9UH17 382 aaKnown RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 CNTRLQ7Z7A1 2325 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 TRAV27A0A087WT01 109 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 EDDM13A0A1B0GTR0 161 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 C17orf113A0A1B0GUU1 675 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 VEGFDO43915 354 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 ADH1CP00326 375 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 PRKAR1AP10644 381 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 ALAS2P22557 587 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 ATP5A1P25705 553 aaKnown RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 BNC1Q01954 994 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 MINDY4Q4G0A6 757 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 DEFB134Q4QY38 66 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 TJAP1Q5JTD0 557 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 PPP2R2DQ66LE6 453 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 FIGNL1Q6PIW4 674 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 GDF7Q7Z4P5 450 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 ARL14Q8N4G2 192 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 GNPDA2Q8TDQ7 276 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 AP3S1Q92572 193 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 SLC41A3Q96GZ6 507 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 LRIG1Q96JA1 1093 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 MKRN2Q9H000 416 aaKnown RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 WDR26Q9H7D7 661 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 COQ3Q9NZJ6 369 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 NFKBIL1Q9UBC1 381 aaPredicted RBP8.53□□□□□ -1.04
MSH4-201ENST00000263187 NDOR1Q9UHB4 597 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 DPP7Q9UHL4 492 aa8.53□□□□□ -1.04
MSH4-201ENST00000263187 LTBP2Q14767 1821 aa8.52□□□□□ -1.04
MSH4-201ENST00000263187 J3QLW9 94 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PSMD9O00233 223 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ZNF19P17023 458 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 CSNK2A2P19784 350 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 AK4P27144 223 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 OMPP47874 163 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 E2F1Q01094 437 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TPBGQ13641 420 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TRAM2Q15035 370 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 FAM78AQ5JUQ0 283 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 FAM205BPQ63HN1 556 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TMEM91Q6ZNR0 172 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 KIAA0907Q7Z7F0 614 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 KLHL36Q8N4N3 616 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 HDDC3Q8N4P3 179 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 OR7G2Q8NG99 324 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 SMG7Q92540 1137 aaKnown RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 GCDHQ92947 438 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 CHFRQ96EP1 664 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PPP1R16AQ96I34 528 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PRSS16Q9NQE7 514 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ACSS1Q9NUB1 689 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 NKIRAS2Q9NYR9 191 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 MAT2BQ9NZL9 334 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ZNF222Q9UK12 451 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ASB4Q9Y574 426 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 MDC1Q14676 2089 aaKnown RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 A0A1W2PRG6 482 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 INMT-MINDY4F8WBC2 141 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PEX12O00623 359 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 SURF4O15260 269 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 LDB3O75112 727 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 EML2O95834 649 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TFPIP10646 304 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PAICSP22234 425 aaKnown RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 NOS3P29474 1203 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 EVX1P49640 407 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 FAPQ12884 760 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TSPAN31Q12999 210 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 IRF4Q15306 451 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 TRMT12Q53H54 448 aaKnown RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 VASNQ6EMK4 673 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ABHD17CQ6PCB6 329 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 GET4Q7L5D6 327 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 CXXC5Q7LFL8 322 aaKnown RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 OR6C4Q8NGE1 309 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 GRPEL2Q8TAA5 225 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 ELP4Q96EB1 424 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 DNAJA3Q96EY1 480 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 LINC00615Q96LM1 132 aaPredicted RBP8.52□□□□□ -1.05
MSH4-201ENST00000263187 SPATA5L1Q9BVQ7 753 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PPP1R3EQ9H7J1 279 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PELI2Q9HAT8 420 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 WASH6PQ9NQA3 447 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 PRDM7Q9NQW5 492 aa8.52□□□□□ -1.05
MSH4-201ENST00000263187 NPAP1Q9NZP6 1156 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms