RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 CNKSR3Q6P9H4 555 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 CAMKMTQ7Z624 323 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 GOT1L1Q8NHS2 421 aaPredicted RBP12.15□□□□□ -0.46
SNX1-201ENST00000261889 TMEM163Q8TC26 289 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 POLDIP3Q9BY77 421 aaKnown RBP12.15□□□□□ -0.46
SNX1-201ENST00000261889 SPRTNQ9H040 489 aaPredicted RBP12.15□□□□□ -0.46
SNX1-201ENST00000261889 SLC25A18Q9H1K4 315 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 C20orf141Q9NUB4 165 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 HS3ST2Q9Y278 367 aa12.15□□□□□ -0.46
SNX1-201ENST00000261889 GRM6O15303 877 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 MPC2O95563 127 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 LINC00271P0C7V0 271 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 PIPP12273 146 aaPredicted RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 POLR2EP19388 210 aaKnown RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 NAA10P41227 235 aaPredicted RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 CLDN20P56880 219 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 OR12D2P58182 307 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 POLR2LP62875 67 aaKnown RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 SUZ12Q15022 739 aaKnown RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 MEDAGQ5VYS4 303 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 SLC36A4Q6YBV0 504 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 CEACAM19Q7Z692 300 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 COMMD7Q86VX2 200 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 FAM26EQ8N5C1 309 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 LRRC17Q8N6Y2 441 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 CLDN22Q8N7P3 220 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 KCT2Q8NC54 265 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 GRHL3Q8TE85 626 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 SIPA1Q96FS4 1042 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 ARHGAP9Q9BRR9 750 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 EFCAB11Q9BUY7 163 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 GON7Q9BXV9 100 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 ZDHHC5Q9C0B5 715 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 TMEM5Q9Y2B1 443 aa12.15□□□□□ -0.47
SNX1-201ENST00000261889 AK6Q9Y3D8 172 aaKnown RBP12.15□□□□□ -0.47
SNX1-201ENST00000261889 TEX13CA0A0J9YWL9 993 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SLC9B1P1A6NJY1 282 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 LRRN3E7EW58 273 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 H3BUI4 141 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 UGDHO60701 494 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 FAM157BP0CG42 384 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 GABRA5P31644 462 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 BSGP35613 385 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SELENOPP49908 381 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 PPP3R1P63098 170 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 FAM198BQ6UWH4 519 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 ZNF783Q6ZMS7 281 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SIAH3Q8IW03 269 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 AP3S1Q92572 193 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 KCTD12Q96CX2 325 aaKnown RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 MED30Q96HR3 178 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 MICU1Q9BPX6 476 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 AICDAQ9GZX7 198 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 LRRN3Q9H3W5 708 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 FN3KQ9H479 309 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 POLMQ9NP87 494 aaPredicted RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 FBXO34Q9NWN3 711 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 H2AFY2Q9P0M6 372 aaPredicted RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 P2RX2Q9UBL9 471 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 TNFRSF10DQ9UBN6 386 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 CHURC1-FNTBB4DL54 471 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SLC16A5O15375 505 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 THY1P04216 161 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 PTX3P26022 381 aaPredicted RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 PYCR1P32322 319 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 PSMB10P40306 273 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 RGS8P57771 180 aaPredicted RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 BTN1A1Q13410 526 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 TP53I3Q53FA7 332 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 TMEM255AQ5JRV8 349 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 EOGTQ5NDL2 527 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 CHCHD4Q8N4Q1 142 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 ZNF433Q8N7K0 673 aaPredicted RBP12.14□□□□□ -0.47
SNX1-201ENST00000261889 NXPE3Q969Y0 559 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 PPP1R16AQ96I34 528 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.14□□□□□ -0.47
SNX1-201ENST00000261889 OR10A4Q9H209 315 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SLCO1C1Q9NYB5 712 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 SLC7A7Q9UM01 511 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 POLHQ9Y253 713 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 FRYLO94915 3013 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 NOTCH4Q99466 2003 aa12.14□□□□□ -0.47
SNX1-201ENST00000261889 IDSB3KWA1 339 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 CDK2AP1O14519 115 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 GMFGO60234 142 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 SOX30O94993 753 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 ZIC2O95409 532 aaPredicted RBP12.13□□□□□ -0.47
SNX1-201ENST00000261889 SIX6O95475 246 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 PDX1P52945 283 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 AP2S1P53680 142 aaPredicted RBP12.13□□□□□ -0.47
SNX1-201ENST00000261889 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.13□□□□□ -0.47
SNX1-201ENST00000261889 PCDH1Q08174 1060 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 EXOSC2Q13868 293 aaKnown RBP12.13□□□□□ -0.47
SNX1-201ENST00000261889 SSX6Q7RTT6 188 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 UBE3DQ7Z6J8 389 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 KIAA0907Q7Z7F0 614 aaPredicted RBP12.13□□□□□ -0.47
SNX1-201ENST00000261889 OR2T35Q8NGX2 323 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 TRMT10AQ8TBZ6 339 aaKnown RBP12.13□□□□□ -0.47
SNX1-201ENST00000261889 RFT1Q96AA3 541 aa12.13□□□□□ -0.47
SNX1-201ENST00000261889 CNRIP1Q96F85 164 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms