RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FZD8Q9H461 694 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CLMPQ9H6B4 373 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 IGSF5Q9NSI5 407 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 EMCNQ9ULC0 261 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NEMP2A6NFY4 417 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 EVX1P49640 407 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 GP2P55259 537 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RAP1AP62834 184 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LEXMQ3ZCV2 418 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 NPY6RQ99463 290 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 SAMD10Q9BYL1 202 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MPTX1A8MV57 137 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 M0R143 59 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LY86O95711 162 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 ADRB3P13945 408 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FGF9P31371 208 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 CCR4P51679 360 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 MFSD13AQ14CX5 517 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RNF113BQ8IZP6 322 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 FAM26EQ8N5C1 309 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR4M1Q8NGD0 313 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 OR5M8Q8NGP6 311 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 EXOSC8Q96B26 276 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 IMP4Q96G21 291 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 PRRC1Q96M27 445 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 TMPRSS13Q9BYE2 586 aa4.43□□□□□ -1.7
SCN1A-220ENST00000641603 APOBEC3GQ9HC16 384 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 AJAP1Q9UKB5 411 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 RBM7Q9Y580 266 aaKnown RBP4.43□□□□□ -1.7
SCN1A-220ENST00000641603 LOC102723532A0A0G2JNH3 316 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CLDN4O14493 209 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CCR8P51685 355 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SUOXP51687 545 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GRIK4Q16099 956 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MANEALQ5VSG8 457 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 KLBQ86Z14 1044 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 LINC00518Q8N0U6 118 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF461Q8TAF7 563 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 HLA-CQ95604 372 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZBTB45Q96K62 511 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ADAD1Q96M93 576 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MARVELD1Q9BSK0 173 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR51V1Q9H2C8 321 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SMOC2Q9H3U7 446 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 DUS2Q9NX74 493 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 RASD1Q9Y272 281 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PIK3C2AO00443 1686 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR2T1O43869 369 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ERAL1O75616 437 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ENDOD1O94919 500 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 AMY2BP19961 511 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SDHBP21912 280 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CRY2Q49AN0 593 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 NLRC3Q7RTR2 1065 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GLIS1Q8NBF1 620 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF485Q8NCK3 441 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 STEAP2Q8NFT2 490 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR52H1Q8NGJ2 320 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GNPNAT1Q96EK6 184 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ADAM19Q9H013 955 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 DEFB129Q9H1M3 183 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 KIAA1522Q9P206 1035 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 COL5A2P05997 1499 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZCWPW2A0A1B0GU75 182 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MOXD2PA6NHM9 499 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CBY3A6NI87 242 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FAM166BA8MTA8 275 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CXCL11O14625 94 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 AGXTP21549 392 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PRPS1P60891 318 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GPR176Q14439 515 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GPR68Q15743 365 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 FIP1L1Q6UN15 594 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR5W2Q8NH69 310 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 HPSE2Q8WWQ2 592 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OPALINQ96PE5 141 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PKP4Q99569 1192 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 HDHD5Q9BXW7 423 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 EXOSC3Q9NQT5 275 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SUSD2Q9UGT4 822 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF107Q9UII5 783 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PARP4Q9UKK3 1724 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CPED1A4D0V7 1026 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 AP4M1O00189 453 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SOCS5O75159 536 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 SNRNP70P08621 437 aaKnown RBP4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CMPK1P30085 196 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PTH2RP49190 550 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM35AQ53FP2 167 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C15orf39Q6ZRI6 1047 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C1orf127Q8N9H9 656 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR4K17Q8NGC6 315 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 OR13D1Q8NGV5 346 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 PNPLA2Q96AD5 504 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 C19orf43Q9BQ61 176 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 TGIF2Q9GZN2 237 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 ADAP2Q9NPF8 381 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 MMP26Q9NRE1 261 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 GALPQ9UBC7 116 aa4.42□□□□□ -1.7
SCN1A-220ENST00000641603 CACFD1Q9UGQ2 172 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms