RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MCHR1Q99705 422 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 NRTNQ99748 197 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TMEM121Q9BTD3 319 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TSSK1BQ9BXA7 367 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 GLIPR2Q9H4G4 154 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 COPS7BQ9H9Q2 264 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 GPN2Q9H9Y4 310 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ELL3Q9HB65 397 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 IL1RAPL2Q9NP60 686 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 NANSQ9NR45 359 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MMP26Q9NRE1 261 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 PNO1Q9NRX1 252 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 FAM114A2Q9NRY5 505 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 DCAF13Q9NV06 445 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 MARCH5Q9NX47 278 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CYP39A1Q9NYL5 469 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 GALPQ9UBC7 116 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TRPC4Q9UBN4 977 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 LHX3Q9UBR4 397 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 OPN4Q9UHM6 478 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MAD2L2Q9UI95 211 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 LCMT1Q9UIC8 334 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TEKT2Q9UIF3 430 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TRMT6Q9UJA5 497 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 RIMS3Q9UJD0 308 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 RAB26Q9ULW5 256 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 FZR1Q9UM11 496 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 BARX2Q9UMQ3 279 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ENTPD4Q9Y227 616 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 TP53TG5Q9Y2B4 290 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 MRPS2Q9Y399 296 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 EXOSC1Q9Y3B2 195 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 NEUROG3Q9Y4Z2 214 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 SLCO1B1Q9Y6L6 691 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 KMT2BQ9UMN6 2715 aaPredicted RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 GPR98Q8WXG9 6306 aa0.22□□□□□ -2.37
VPS35-212ENST00000640313 CFAP65Q6ZU64 1925 aaKnown RBP0.22□□□□□ -2.37
VPS35-212ENST00000640313 ZNF469Q96JG9 3925 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 LTBP1Q14766 1721 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 COL1A2P08123 1366 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 DHX29Q7Z478 1369 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 MTCL1Q9Y4B5 1905 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 A0A0G2JLM5 398 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 IGHV3-64DA0A0J9YX35 117 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KIR2DS1A0A191URI9 304 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 A0A1W2PRQ8 180 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 A0A1W2PRV1 198 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TUBAL3A6NHL2 446 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CCDC69A6NI79 296 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 LRRC30A6NM36 301 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PP2D1A8MPX8 630 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NPIPA2E9PIF3 369 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 E9PMD0 336 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 C11orf98E9PRG8 122 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 H0YL77 283 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 K7N7A8 449 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 SGK494L7N484 410 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CACNB4O00305 520 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 EI24O14681 340 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CHEK1O14757 476 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ZNF263O14978 683 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ALOX15BO15296 676 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MAGEB4O15481 346 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 HTATSF1O43719 755 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 VEGFDO43915 354 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NME2P1O60361 137 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 HCN1O60741 890 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 KINO60870 393 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 ZNF780AO75290 641 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 TBCAO75347 108 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 GPX5O75715 221 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 SUPT7LO94864 414 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 AKR7A3O95154 331 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NDUFA7O95182 113 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 GOSR1O95249 250 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TGDSO95455 350 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 OLFM2O95897 454 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 GAS8O95995 478 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 MOSP00540 346 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 INSP01308 110 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 HPNP05981 417 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 APRTP07741 180 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 H2AFZP0C0S5 128 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TOP1P11387 765 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 AREGP15514 252 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 XRCC1P18887 633 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 CELP19835 753 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 TMOD1P28289 359 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 HTR1EP28566 365 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CD1BP29016 333 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 PTPN6P29350 595 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 AQP1P29972 269 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 ATP5DP30049 168 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 STIP1P31948 543 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 CDH5P33151 784 aaPredicted RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 CD80P33681 288 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 CTNNA1P35221 906 aaKnown RBP0.21□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A3P35503 534 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 NUDT1P36639 197 aa0.21□□□□□ -2.38
VPS35-212ENST00000640313 BTDP43251 543 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms