RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TAS2R16Q9NYV7 291 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C3P01024 1663 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF142P52746 1687 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PRODHO43272 600 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TSPAN3O60637 253 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 USP2O75604 605 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GLP2RO95838 553 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SPATA31C1P0DKV0 1188 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MSR1P21757 451 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CCR1P32246 355 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MC3RP41968 323 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MAGEA3P43357 314 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 NPBWR1P48145 328 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SORDQ00796 357 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FOXK2Q01167 660 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 OGDHQ02218 1023 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PRKCZQ05513 592 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 LCP2Q13094 533 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 NOGQ13253 232 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CTBP1Q13363 440 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HYAL4Q2M3T9 481 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF699Q32M78 642 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FAM199XQ6PEV8 388 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SLC22A25Q6T423 547 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 IL27RAQ6UWB1 636 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF783Q6ZMS7 281 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CAMKMTQ7Z624 323 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MFSD6LQ8IWD5 586 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 LGI4Q8N135 537 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FAM160A2Q8N612 972 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF615Q8N8J6 731 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DNERQ8NFT8 737 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 OR10A7Q8NGE5 316 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 THAP3Q8WTV1 239 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MRGPRX2Q96LB1 330 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF2Q9BSG1 426 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 BHLHE41Q9C0J9 482 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GABARAPL1Q9H0R8 117 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 XYLT2Q9H1B5 865 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HIPK2Q9H2X6 1198 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZFYVE1Q9HBF4 777 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CREBZFQ9NS37 354 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TMEFF2Q9UIK5 374 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GPR34Q9UPC5 381 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TCRBV21S2A2A0A5A6 115 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GRAP2O75791 330 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 RAB36O95755 333 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HEXAP06865 529 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CD3GP09693 182 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CXCL2P19875 107 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PSMB1P20618 241 aaKnown RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DHPSP49366 369 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 STK19P49842 368 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SLC26A5P58743 744 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TAS2R39P59534 338 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ATXN7L3Q14CW9 347 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SLC35D3Q5M8T2 416 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GRHL2Q6ISB3 625 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CXorf57Q6NSI4 855 aaKnown RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CDC42EP5Q6NZY7 148 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 RPS27LQ71UM5 84 aaKnown RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GOLGA7Q7Z5G4 137 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PRSS35Q8N3Z0 413 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SLC44A3Q8N4M1 653 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FBXO15Q8NCQ5 510 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 NSUN4Q96CB9 384 aaKnown RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 OTUB2Q96DC9 234 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF354BQ96LW1 612 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CDCA3Q99618 268 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM231Q9H6L2 316 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 UPB1Q9UBR1 384 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MOKQ9UQ07 419 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SCN4AP35499 1836 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SURF4O15260 269 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TOX3O15405 576 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MAGEB4O15481 346 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PIAS2O75928 621 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HLA-DQB1P01920 261 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DTYMKP23919 212 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HTR2CP28335 458 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ART1P52961 327 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CDH12P55289 794 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 CAV3P56539 151 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ACSM1Q08AH1 577 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 OR5I1Q13606 314 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ENPP2Q13822 863 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 GSG1Q2KHT4 349 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ATG9BQ674R7 924 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 LAIR2Q6ISS4 152 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 MTFR2Q6P444 385 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 VITQ6UXI7 678 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 P4HA3Q7Z4N8 544 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ABI3BPQ7Z7G0 1075 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SIAH3Q8IW03 269 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DAW1Q8N136 415 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 LRRC18Q8N456 261 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PRR18Q8N4B5 295 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 PROKR2Q8NFJ6 384 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 OR52J3Q8NH60 311 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FBLIM1Q8WUP2 373 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms