RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF701Q9NV72 531 aaPredicted RBP17.42■□□□□ 0.38
CLN3-262ENST00000637699 CLEC4AQ9UMR7 237 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 MXRA5Q9NR99 2828 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 SHISA8B8ZZ34 492 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 PAX1P15863 534 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 MPIP34949 423 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 PHBP35232 272 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 MAGEA12P43365 314 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 CKAP4Q07065 602 aaKnown RBP17.41■□□□□ 0.38
CLN3-262ENST00000637699 CAPRIN1Q14444 709 aaKnown RBP17.41■□□□□ 0.38
CLN3-262ENST00000637699 LGSNQ5TDP6 509 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 MARCH3Q86UD3 253 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 WFDC8Q8IUA0 241 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 METTL25Q8N6Q8 603 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 MAPK1IP1LQ8NDC0 245 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 C16orf78Q8WTQ4 265 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 GFM2Q969S9 779 aaKnown RBP17.41■□□□□ 0.38
CLN3-262ENST00000637699 C1GALT1C1Q96EU7 318 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 PLPPR2Q96GM1 343 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 BBS4Q96RK4 519 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 MRPL57Q9BQC6 102 aaKnown RBP17.41■□□□□ 0.38
CLN3-262ENST00000637699 ACSS3Q9H6R3 686 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 PLSCR4Q9NRQ2 329 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 ZDHHC18Q9NUE0 388 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 EMC9Q9Y3B6 208 aa17.41■□□□□ 0.38
CLN3-262ENST00000637699 A8MT66 165 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 PLGP00747 810 aaPredicted RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 KRT6AP02538 564 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 KRT6BP04259 564 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 FCGR2AP12318 317 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 HSD3B1P14060 373 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 PPP3CBP16298 524 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 HSD3B2P26439 372 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 HSD17B3P37058 310 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 EIF1AXP47813 144 aaKnown RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 SLC6A8P48029 635 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 RFX3P48380 749 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 KRT6CP48668 564 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 CLCQ05315 142 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 KRTAP1-1Q07627 177 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 CSTF3Q12996 717 aaKnown RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 HEPACAMQ14CZ8 416 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 CYP27C1Q4G0S4 372 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 TEX35Q5T0J7 233 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 C8orf74Q6P047 294 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 STAC2Q6ZMT1 411 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 APIPQ96GX9 242 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 EBPLQ9BY08 206 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 MRPL46Q9H2W6 279 aaKnown RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 NINJ2Q9NZG7 142 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 DMGDHQ9UI17 866 aaKnown RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 ABCG2Q9UNQ0 655 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 AP4B1Q9Y6B7 739 aa17.4■□□□□ 0.38
CLN3-262ENST00000637699 CHD3Q12873 2000 aaKnown RBP17.4■□□□□ 0.38
CLN3-262ENST00000637699 PRR14LQ5THK1 2151 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 EIF1AYO14602 144 aaKnown RBP17.39■□□□□ 0.37
CLN3-262ENST00000637699 HS3ST1O14792 307 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 COQ9O75208 318 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 JUNP05412 331 aaKnown RBP17.39■□□□□ 0.37
CLN3-262ENST00000637699 INHBAP08476 426 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 SBK3P0C264 359 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 COL6A2P12110 1019 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 CLK3P49761 638 aaKnown RBP17.39■□□□□ 0.37
CLN3-262ENST00000637699 CTBP2P56545 445 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 BTKQ06187 659 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 ACSM2AQ08AH3 577 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 DECR1Q16698 335 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 WHAMMP3Q1A5X7 153 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 ACSM2BQ68CK6 577 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 ALKBH2Q6NS38 261 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 GGNQ86UU5 652 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 ZNF611Q8N823 705 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 OR6K3Q8NGY3 331 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 C1QTNF3Q9BXJ4 246 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 ACPTQ9BZG2 426 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 FAM120CQ9NX05 1096 aaKnown RBP17.39■□□□□ 0.37
CLN3-262ENST00000637699 LAMP3Q9UQV4 416 aa17.39■□□□□ 0.37
CLN3-262ENST00000637699 RNF223E7ERA6 249 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 ULK1O75385 1050 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 SUPT7LO94864 414 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 NCBP2P52298 156 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-262ENST00000637699 OCRLQ01968 901 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 VEZF1Q14119 521 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 RASA2Q15283 850 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 PRSS53Q2L4Q9 553 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 GLYR1Q49A26 553 aaPredicted RBP17.38■□□□□ 0.37
CLN3-262ENST00000637699 SPIN4Q56A73 249 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 TMEM107Q6UX40 140 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 TMEM151AQ8N4L1 468 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 CDC26Q8NHZ8 85 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 METTL6Q8TCB7 284 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 AKAP1Q92667 903 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-262ENST00000637699 GMPPAQ96IJ6 420 aaPredicted RBP17.38■□□□□ 0.37
CLN3-262ENST00000637699 ACTR6Q9GZN1 396 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 VDAC3Q9Y277 283 aa17.38■□□□□ 0.37
CLN3-262ENST00000637699 MYO1GB0I1T2 1018 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 TMCC2O75069 709 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 IL33O95760 270 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 OPN1LWP04000 364 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 HMOX2P30519 316 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms